UW School of Aquatic & Fishery Sciences
Journal Articles, 1991—present
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Citations starting in 2010 include DOI links for accessing the articles online. If you are unable to do so, however, please contact the SAFS author(s) directly to obtain a PDF or reprint.
2001
Allendorf, FW, P Spruell, FM Utter. 2001. Whirling disease and wild trout: Darwinian fisheries management. Fisheries May:27-29.
Barry, TP, MJ Unwin, JA Malison, TP Quinn. 2001. Free and total cortisol levels in semelparous and iteroparous chinook salmon. J. Fish Biol. 59:1673-1676.
Beauchamp, DA, JJ Van Tassell. 2001. Modeling interactions of bull trout in Lake Billy Chinook, Oregon. Trans. Am. Fish. Soc. 130:204-216.
Beer, WN, JJ Anderson. 2001. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook. Can. J. Fish. Aquat. Sci. 58:943-949.
Bentzen, P, JB Olsen, JE McLean, TR Seamons, TP Quinn. 2001. Kinship analysis of Pacific salmon: Insights into mating, homing, and timing of reproduction. J. Hered. 92:127-136.
Branch, TA. 2001. A review of orange roughy Hoplostethus atlanticus fisheries, estimation methods, biology and stock structure. In AIL Payne, SC Pillar, RJM Crawford (eds), A Decade of Namibian Fisheries Science. Spec. Ed., S. Afr. J. Mar. Sci. 23:181-203.
Branch, TA, DS Butterworth. 2001. Estimates of abundance south of 60S for cetacean species sighted frequently on the 1978/79 to 1997/98 IWC/IDCR-SOWER sighting surveys. J. Cetac. Res. Manage. 3(3):251-270.
Branch, TA, DS Butterworth. 2001. Southern Hemisphere minke whales: standardised abundance estimates from the 1978/79 to 1997/98 IDCR-SOWER surveys. J. Cetac. Res. Manage. 3(2):143-174.
Britt, LL, ER Loew, WN McFarland. 2001. Visual pigments in the early life stages of Pacific Northwest marine fishes. J. Exper. Biol. 204:2581-2587.
Courtenay, S.C., T.P. Quinn, H.M.C. Dupuis, C. Groot and P.A. Larkin. 2001. Discrimination of family-specific odours by juvenile coho salmon: roles of learning and odour concentration. J. Fish Biol. 58:107-125.
Cui, G, NJ Bax, AE Punt, IA Knuckey. 2001. Estimating gill-net selectivity for five species caught in the South East Fishery, Australia. Mar. Freshwat. Res. 52:691-699.
DeInnocentiis, S, L Sola, S Cataudella, P. Bentzen. 2001. Allozyme and microsatellite loci provide discordant estimates of population differentiation in the endangered dusky grouper (Epinephelus marginatus) within the Mediterranean Sea. Mol. Ecol. 10:2163-2175.
Farkas, T, E Fodor, K Kitajka, JE Halver. 2001. Response of fish membranes to environmental temperature. Aquacult. Res. 32:645-655.
Finley, CA, TJ Mulligan, CS Friedman. 2001. Life history of an exotic sabellid polychaete, Terebrasabella heterouncinata: Fertilization strategy and influence of temperature on reproduction. J. Shellfish Res. 20(2):883-888.
Foster, MS, GR VanBlaricom. 2001. Spatial variation in kelp forest communities along the Big Sur coast of central California, USA. Cryptogamie Algol. 22:173-186.
Friedland, KD, RV Walker, ND Davis, KW Myers, GW Boehlert, S Urawa, Y Ueno. 2001. Open-ocean orientation and return migration routes of chum salmon based on temperature data from data storage tags. Mar. Ecol. Prog. Ser. 216:235-252.
Gardner SC, CE Grue, WW Major, LL Conquest. 2001. Aquatic invertebrate communities associated with purple loosestrife (Lythrum salicaria), cattail (Typha latifolia) and bulrush (Scirpus acutus) in central Washington, USA. Wetlands 21:593-601.
Gende, SM, TP Quinn, MF Willson. 2001. Consumption choice by bears feeding on salmon. Oecologia 127:372-382.
Gerber, LR, R Hilborn. 2001. Catastrophic events and recovery from low densities in populations of otariids: implication for risk of extinction. Mamm. Rev. 11:131-150.
Gerber, LR, GR VanBlaricom. 2001. Implications of three viability models for the conservation status of the western population of Steller sea lions (Eumetopias jubatus). Biol. Cons. 102:261-269.
Gove, NE, RT Edwards, LL Conquest. 2001. Effects of scale on land use and water quality relationships: a longitudinal basin-wide perspective. J. Am. Wat. Resourc. Assoc. 37:1721-1734.
Jech, JM, JK Horne. 2001. Effects of in situ target spatial distributions on acoustic density estimates. ICES J. Mar. Sci. 58:123-136.
Halver, JE. 2001. Editorial and priorities for needs in fish nutrition research. Aquacult. Res. 32:611-614.
Halver, JE. 2001. My 50 years in fish nutrition 1949-1999. Aquacult. Res. 32:615-622.
Hauser L., C Turan, GR Carvalho. 2001. Haplotype frequency distribution and discriminatory power of two mtDNA fragments in a marine pelagic teleost (Atlantic herring, Clupea harengus). Heredity 87:621-630.
Hendry, AP, OK Berg, TP Quinn. 2001. Breeding location choice in salmon: causes (habitat, competition, body size, energy stores) and consequences (life span, energy stores). Oikos 93:407-418.
Hershberger, PK, RM Kocan, NE Elder, GD Marty, J Johnson. 2001. Management of Pacific herring spawn-on-kelp fisheries to optimize fish health and product quality. N. Am. J. Fish. Mgmt 21:976-981.
Hilborn, R. 2001. Calculation of biomass trend, exploitation rate and surplus production from survey and catch data. Can. J. Fish. Aquat. Sci. 58:579-584.
Hilborn, R, D Eggers. 2001. A review of the hatchery programs for pink salmon in Prince William Sound and Kodiak Island, Alaska: response to comment. Trans. Am. Fish. Soc. 130:720-724.
Hilborn, R, JJ Maguire, AM Parma, AA Rosenberg. 2001. The precautionary approach and risk management: can they increase the probability of success in fisheries management. Can. J. Fish. Aquat. Sci. 58:99-107.
Hobday, D, AE Punt. 2001. Size-structured population modelling and risk assessment of the Victorian southern rock lobster, Jasus edwardsii, fishery. Mar. Freshwat. Res.0
Huber, HR, SJ Jeffries, RF Brown, RL DeLong, G VanBlaricom. 2001. Correcting aerial survey counts of harbor seals (Phoca vitulina richardsi) in Washington and Oregon. Mar. Mamm. Sci. 17:276-293.
Hyatt, TL, RJ Naiman. 2001. The residence time of large woody debris in the Queets River, Washington, USA. Ecol. Appl. 11:191-202.
Jameson, SC, MV Erdmann, JR Karr, KW Potts. 2001. Charting a course toward diagnostic monitoring: a continuing review of coral reef attributes and a research strategy for creating coral reef indexes of biotic integrity. Bul. Mar. Sci. 69:701-744.
Kahler, TH, P Roni, TP Quinn. 2001. Summer movement and growth of juvenile anadromous salmonids in small western Washington streams Can. J. Fish. Aquat. Sci. 58:1947-1956.
Karr, JR, E Morishita Rossano. 2001. Applying public health lessons to protect river health. Ecol. Civil Eng. 4:3-18.
Kimberling, DN, JR Karr, LS Fore. 2001. Measuring human disturbance using terrestrial invertebrates in the shrub–steppe of eastern Washington (USA). Ecol. Indic. 1:63-81.
Kinnison, MT, MJ Unwin, AP Hendry, PT Quinn. 2001. Migratory costs and the evolution of egg size and number allocation in new and indigenous salmon populations. Evolution 55:1656-1667.
Kocan, RM, NE Elder, JR Winton. 2001. Epidemiology of viral hemorrhagic septicemia among juvenile Pacific herring and Pacific sand lances in Puget Sound, Washington. J. Aquat. Anim. Health 13:77-85.
Kocan, RM, PK Hershberger, NE Elder. 2001. Survival of the North American strain of viral hemorrhagic septicemia virus (VHSV) in filtered seawater and seawater containing ovarian fluid, crude oil and serum-enriched culture medium. Dis. Aquat. Org. 44:75-78.
Lasta, ML, JL Valero, T Brey, C Bremec. 2001. Zygochlamys patagonica beds on the Argentinian shelf. Part II: Population dynamics of Z. patagonica. Arch. Fish. Mar. Res. 49(2):125-137.
Liermann, M, R Hilborn. 2001. Depensation, evidence, models and implications. Fish and Fisheries 2:33-58.
Loher, T, DA Armstrong, BG Stevens. 2001. Growth of juvenile red king crab (Paralithodes camtschaticus) in Bristol Bay (Alaska) elucidated from field sampling and analysis of trawl-survey data. Fish. Bull. 99:572-587.
Mackey, G, JE McLean, TP Quinn. 2001. Comparisons of run timing, spatial distribution, and length of wild and newly established hatchery populations of steelhead in Forks Creek, Washington. N. Am. J. Fish. Mgmt. 21:717-724.
Matta, MB, J Linse, C Cairncross, L Francendese, RM Kocan. 2001. Reproductive and transgenerational effects of methylmercury or aroclor 1268 on Fundulus heteroclitus. Environ. Toxicol. Chem. 20:327-335.
McDonald, PS, GC Jensen, DA Armstrong. 2001. The competitive and predatory impacts of the nonindigenous crab Carcinus maenas (L.) on early benthic phase Dungeness crab Cancer magister Dana. J. Exp. Mar. Biol. Ecol. 258:39-54.
McGraw, KA, M Castagna, LL Conquest. 2001. A study of the arkshell clams, Noetia ponderosa (Say 1822) and Anadara ovalis (Bruguiere 1789), in the oceanside lagoons and tidal creeks of Virginia. J. Shellf. Res. 20:185-195.
Mommsen, TP, TW Moon, EM Plisetskaya. 2001. Effects of arginine on pancreatic hormones and hepatic metabolism in rainbow trout. Physiol. Biochem. Zool. 74:668-678.
Mode NA, LL Conquest, DA Marker. 2001. Incorporating prior knowledge in environmental sampling: ranked set sampling and other double sampling procedures. Environmetrics 13:513-521.
Moore, JD, TT Robbins, RP Hedrick, CS Friedman. 2002. Transmission of a rickettsiales-like procaryote Candidatus xenohaliotis californiensis and its role in withering syndrome of california abalone, Haliotus spp. J. Shellfish Res. 20(2):867-874.
Muir, WD, SG Smith, JG Williams, EE Hockersmith, JR Skalski. 2001. Survival estimates for migrant yearling chinook salmon and steelhead in the lower Snake and lower Columbia Rivers, 1993-1998. N. Am. J. Fish. Mgmt. 21:269-282.
Parrish, JK, M. Marvier, RT Paine. 2001. Direct and indirect effects: Interactions between bald eagles and common murres. Ecol. Appl. 11:1858-1869.
Patterson, K, R Cook, C Darby, S Gavaris, L Kell, P Lewy, B Mesnil, A Punt, V Restrepo, D Skagen, G Stefánsson. 2001. Estimating uncertainty in fish stock assessment and forecasting. Fish & Fisheries 2:125-157.
Pierce, AL, BR Beckman, KD Shearer, DA Larsen, WW Dickhoff. 2001. Effects of ration on somatotropic hormones and growth in coho salmon. Comp. Biochem. Physiol. 128:225-264.
Pietsch, TW. 2001. Charles Plumier (1646-1704) and his drawings of French and American fishes. Arch. Nat. Hist. 28:1-57.
Pietsch, TW. 2001. Charles Plumier (1646-1704) and his drawings of French and American fishes: concordance with equivalent illustrations found in the vellums of Aubriet and published works of Gautier d'Agoty, Bloch, Lacepède, Bloch and Schneider, and Cuvier and Valenciennes Arch. Nat. Hist. 28:261-268.
Pietsch, TW, K. Amaoka, DE Stevenson, EL MacDonald, BK Urbain, and JA López. 2001. Freshwater fishes of the Kuril Islands and adjacent regions. Spec. Div. 6:133-164.
Pulfrich, A, TA Branch. 2002. Population dynamics and potential yield of three species of giant winkles in the Western Cape, South Africa. S. Afr. J. Mar. Sci. 24:161-183.
Punt, AE, ADM Smith, G Cui. 2001. Review of progress in the introduction of managemen tstrategy evaluation (MSE) approaches in Australia's South East fishery. Mar. Freshwat. Res. 52:719-726.
Punt, AE, ADM Smith, G Cui. 2001. Review of progress in the introduction of managemen tstrategy evaluation (MSE) approaches in Australia's South East fishery. Mar. Freshwat. Res. 52:719-726.
Punt, AE, D Smith. 2001. Assessments of species in the Australian South East Fishery can be sensitive to the method used to convert from size- to age-composition data. Mar. Freshwat. Res. 52:683-690.
Punt, AE, DC Smith, RB Thomson, M Haddon, X He, JM Lyle. 2001. Stock assessment of the blue grenadier Macruronus novaezelandiae resource off south-eastern Australia. Mar. Freshwat. Res. 52:701-717.
Quinn, TP, GB Buck. 2001. Size- and sex-selective mortality of adult sockeye salmon: bears, gulls, and fish out of water. Trans. Am. Fish. Soc. 130:995-1005.
Quinn, TP, AE Hendry, GB Buck. 2001. Balancing natural and sexual selection in sockeye salmon: interactions between body size, reproductive opportunity and vulnerability to predation by bears. Evol. Ecol. Res. 3:917–937.
Quinn, TP, MT Kinnison, MJ Unwin. 2001. Evolution of chinook salmon (Oncorhynchus tshawytscha) populations in New Zealand: pattern, rate, and process. Genetica 112-113:493-513.
Quinn, TP, L Wetzel, S Bishop, K Overberg, DE Rogers. 2001. Influence of breeding habitat on bear predation and age at maturity and sexual dimorphism of sockeye salmon populations. Can. J. Zool. 79:1782–1793.
Rathbone, CK, JK Babbitt, FM Dong, RW Hardy. 2001. Performance of juvenile coho salmon Oncorhynchus kisutch fed diets containing meals from fish wastes, deboned fish wastes, or skin-and-bone by-product as the protein ingredient. J. World Aquacult. Soc. 32:21-39.
Roni, P, TP Quinn. 2001. Effects of wood placement on movements of trout and juvenile coho salmon in natural and artificial stream channels. Trans. Amer. Fish. Soc. 130:675-685.
Rose, KA, JH Cowan Jr, KO Winemiller, RA Myers, R Hilborn. 2001. Compensatory density dependence in fish populations: importance, controversy, understanding and prognosis. Fish and Fisheries 2:293-327.
Saruwatari, T, TW Pietsch, A Shedlock, et al. 2001. Sibling analysis between female and parasitic males of a ceratioid anglerfish (Cryptopsaras couesi, Ceratiidae, Teleostei). DNA Polymorphism 9:82-85.
Sharma, R, R Hilborn. 2001. Empirical relationships between watershed characteristics and coho salmon (Oncorhynchus kisutch) smolt abundance in 14 western Washington streams. Can. J. Fish. Aquat. Sci. 58:1453-1463.
Skalski, JR, DA Coats, AK Fukuyama. 2001. Criteria for oil spill recovery: A case study of the intertidal community of Prince William Sound, Alaska, following the Exxon Valdez oil spill. J. Environ. Mgmt. 28:9-18.
Skalski, JR, J Lady, R Townsend, AE Giorgi, JR Stevenson, CM Peven, RD McDonald. 2001. Estimating in-river survival of migrating salmonid smolts using radiotelemetry. Can. J. Fish. Aquat. Sci. 58:1987-1997.
Smith, PE, JK Horne, DC Schneider. 2001. Life history strategies of anchovy, sardine, and hake in the California Current: comparison of spatial dynamics of the pre-recruit stages. ICES J. Mar. Sci. 58:1063-1071.
Smith, DC, ADM Smith, AE Punt. 2001. Approach and process for stock assessment in the South East Fishery, Australia: a perspective. Mar. Freshwat. Res. 52:671-681.
Soh, SK, DR Gunderson, DH Ito. 2001. The potential role of marine reserves in the management of shortraker rockfish (Sebastes borealis) and rougheye rockfish (S. aleutianus) in the Gulf of Alaska. Fish. Bull. 99:168-179.
Speckman, SG, G Sheffield. 2001. First record of an anomalously white killer whale near St. Lawrence Island, northern Bering Sea, Alaska. Canadian Field-Naturalist 115(3):501-502.
Steel, EA, P Guttorp, JJ Anderson, DC Caccia. 2001. Modeling juvenile migration using a simple Markov chain. J. Agric., Biol., Environ. Stat. 6:80-88.
Sugiura, SH, J Gabaudan, FM Dong, RW Hardy. 2001. Dietary microbial phytase supplementation and the utilization of phosphorus, trace minerals and protein by rainbow trout [Oncorhynchus mykiss (Walbaum)] fed soybean meal-based diets. Aquacult. Res. 32:583-592.
Utter, FM. 2001. Patterns of subspecific anthropogenic introgression in two salmonid genera. Rev. Fish Biol. Fish. 10:265-279.
Zalewski, M, JE Thorpe, RJ Naiman. 2001. Fish and riparian ecotones—a hypothesis. Ecohydrol. Hydrobiol. 1:11-24.
2002
Abookire, AA, JF Piatt, SG Speckman. 2002. A nearsurface, daytime occurrence of two mesopelagic fish species (Stenobrachius leucopsarus and Leuroglossus schmidti) in a glacial fjord. Fish. Bull. 100:376-380.
Anderson, JJ. 2002. An agent-based event drive foraging model. Nat. Resour. Model. 15:55-82.
Baldwin, CM, DA Beauchamp, CP Gubala. 2002. Seasonal and diel distribution and movement of cutthroat trout from ultrasonic telemetry. Trans. Am. Fish. Soc. 131:143-158.
Bechtold, JS, RT Edwards, RJ Naiman. 2002. Biotic versus hydrologic control over seasonal nitrate leaching in a floodplain forest. Biogeochemistry.
Bernal-Ramírez, JH, GJ Adcock, L Hauser, GR Carvalho, PJ Smith. 2002. Temporal stability of genetic population structure in the New Zealand snapper, Pagrus auratus, and relationship to coastal currents. Mar. Biol. 142:567-574.
Bertelsen, E, TW Pietsch. 2002. A new species of deep-sea anglerfish of the genus Gigantactis (Lophiiformes: Gigantactinidae) from the Western North Atlantic Ocean. Copeia 2002.:958-961.
Bodkin, JL, Be Ballachey, TA Dean, AK Fukuyama, SC Jewett, L Mcdonald, DH Monson, CE O'Clair, GR VanBlaricom. 2002. Sea otter population status and the process of recovery from the 1989 'Exxon Valdez' oil spill. Mar. Ecol. Prog. Ser. 41:237-253.
Butterworth, DS, JL Korrûbel, AE Punt. 2002. What is needed to make a simple density-dependent response population model consistent with data for eastern North Pacific gray whales? J. Cetac. Res. Mgmt. 4:63-76.
Butterworth, DS, DL Borchers, AE Punt. 2002. Dynamic response analysis for the eastern North Pacific gray whale population: an alternative approach. J. Cetac. Res. Mgmt. 4:77-83.
Butterworth, DS, AE Punt. 2002. Some suggestions for further analyses of the implications of trans-Atlantic mixing for North Atlantic bluefin tuna assessments. ICCAT 54:365-371.
Carter, SK, GR VanBlaricom. 2002. Effects of experimental harvest on red sea urchins (Strongylocentrotus franciscanus) in northern Washington. Fish. Bull. 100:662-673.
Clewey, A, RM Kocan, AA Kocan. 2002. Short communication: An intraerythrocytic parasite from the spiny dogfish, Squalus acanthias L., from the Pacific Northwest. J. Fish Dis. 25:1-4.
Cooper, A. B., J. C. Pinheiro, J.W. Unsworth and R. Hilborn. 2002. Predicting hunter success rates from elk and hunter abundance, season structure, and habitat. Wildlife Society Bulletin 30: 1068-1077.
Cui, G, AE Punt, LA Pastene, M Goto. 2002. Bayes and Empirical Bayes approaches to addressing stock structure questions using mtDNA data, with an illustrative application to North Pacific minke whales. J. Cetac. Res. Mgmt 4:123-134.
Dean, TA, JL Bodkin, AK Fukuyama, SC Jewett, DH Monson, CE O'Clair, GR VanBlaricom. 2002. Food limitation and the recovery of sea otters following the 'Exxon Valdez' oil spill. Mar. Ecol. Prog. Ser. 41:255-270.
Drake, D, RJ Naiman, JM Helfield. 2002. Reconstructing salmon abundance for rivers: an initial dendrochronological evaluation. Ecology.
Dunn, J. R. 2002a. William Francis Thompson (1888-1965), a preeminent fishery biologist of the early and mid twentieth century. Mar. Fish. Rev. 63(2):1-4.
Dunn, J. R. 2002b. William Francis Thompson (1888-1965) and his pioneering studies of the Pacific halibut, Hippoglossus stenolepis. Mar. Fish. Rev. 63(2):5-14.
Dunn, J. R. 2002c. William Francis Thompson (1888-1965) and the dawn of marine fisheries research in California. Mar. Fish. Rev. 63(2):15-24.
Ehrler, CP, JR Steinbeck, EA Laman, JB Hedgepeth, JR Skalski, DL Mayer. 2002. A process for evaluating adverse environmental impacts from cooling water system entrainment at a California power plant. The Sci. World J. 2:81-105.
Essington, TE, JF Kitchell, C Boggs, DE Schindler, RJ Olson, R Hilborn. 2002. Alternative fisheries and the predation rate of yellowfin tuna in the eastern Pacific Ocean. Ecol. Applic. 12:724-734.
Ferrero, RC, RC Hobbs, GR VanBlaricom. 2002. Indications of habitat use patterns among small cetaceans in the central North Pacific based on fisheries observer data. J. Cet. Res. Mgmt. 4:331-321.
Francis, RC. 2002. Essay: Some thoughts on sustainability and marine conservation. Fisheries 27:18-21.
Friedman, CS, W Biggs, JD Shields, RP Hedrick. 2002. Transmission of Withering Syndrome in black abalone, Haliotis cracherodii Leach. J. Shellfish Res. 21:817-824.
Gove, NE, JR Skalski, P Zager, RL Townsend. 2002. Statistical models for population reconstruction using age-at-harvest data. J. Wildl. Mgmt. 66:310-320.
Gray, A, CA Simenstad, DL Bottom, TJ Cornwell. 2002. Contrasting functional performance of juvenile salmon in recovering wetlands of the Salmon River estuary, Oregon USA. Restor. Ecol. 10:514-526.
Halpenny, CM, RM Kocan, JR Winton, JA Perry, PK Hershberger. 2002. Elevated temperature exacerbates Ichthyophonus infections in buffalo sculpin. Fish Health Newslett. 30:17-20.
Hamel, OS, JJ Anderson. 2002. Relationship between antigen concentration and bacterial load in Pacfiic salmon with bacterial kidney disease. Dis. Aquat. Org. 51:85-92.
Hauser, L, GJ Adcock, PJ Smith, JH Bernal Ramirez, GR Carvalho. 2002. Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper ( Pagrus auratus). Proc. Nat. Acad. Sci. 99:11742.
Hauser, L, GJ Adcock, PJ Smith, JH Bernal Ramirez, GR Carvalho. 2002. The effects of NPY and insulin on food intake regulation in fish. Am. Zool. 40:296-308.
Hedgepeth, JB, GE Johnson, JR Skalski, J Burczynski. 2002. Active fish sonar (AFTS) for assessing fish behavior. Acta Acoustic United with Acustica 88:739-742.
Helfield, JM, RJ Naiman. 2002. Salmon and alder as nitrogen sources to riparian forests in a boreal Alaskan watershed. Oecologia 133:573-582.
Hendry, MA, JK Wenburg, KW Myers, AP Hendry. 2002 Genetic and phenotypic variation throug the migratory season provides evidence for multiple populations of wild steelhead in the Dean River, British Columbia. Trans. Am. Fish. Soc. 131:418-434.
Hershberger, PK, K Stick, B Bui, C Carroll, B Fall, C Mork, JA Perry, E Sweeney, J Wittouck, J Winton, R Kocan. 2002. Incidence of Ichthyophonus hoferi in Puget Sound fishes and its increase with age of Pacific herring. J. Aquat. Anim. Health 14:50-56.
Hilborn, R. 2002. Marine reserves and fisheries management. Science 295:1233-1234.
Hilborn, R. 2002. The dark side of reference points. Bull. Mar. Sci. 70:403-408.
Hilborn, R, A Parma, M Maunder. 2002. Exploitation rate reference points for west coast rockfish: are they robust and are there better alternatives. N. Am. J. Fish. Mgmt. 22:365-375.
Hodgson, S, T Quinn. 2002. The timing of adult sockeye salmon migration into fresh water: adaptations by populations to prevailing thermal regimes. Can. J. Zool. 80:542-555.
Ishida, Y, T Azumaya, M Fukuwaka, N Davis. 2002. Interannual variability in stock abundance and body size of Pacific salmon in the central Bering Sea. Prog. Oceanogr. 55:223-234.
Jech, JM, JK Horne. 2002. Three-dimensional visualization of fish morphometry and acoustic backscatter. Acoust. Res. Let. Online 3:35-40.
Jenkins, C, ME Haas, A Olson, JL Ruesink. 2002. Impacts of Trampling on a Rocky Shoreline of San Juan Island, Washington, USA. Natural Areas J. 22:260-269.
Jensen, GC, PS McDonald, DA Armstrong. 2002. East meets west: competitive interactions between green crab Carinus maenas, and native and introduced shore crab Hemigrapsus spp. Mar. Ecol. Prog. Ser. 225:251-262.
Jurado-Molina, J, PA Livingston. 2002. Climate forcing effects on trophically-linked groundfish populations: implications for fisheries management. Can. J. Fish. Aquat. Sci. 59(12):1941-1951.
Jurado-Molina, J, PA Livingston. 2002. Multispecies perspectives on the Bering Sea ground fisheries management regime. N. Am. J. Fish. Mgmt. 22:1164-1175.
Karr, JR, DN Kimberling. 2002. A terrestrial arthropod index of biological integrity for shrub-steppe landscapes. Northw. Sci. 77:202-213.
Kinnison, MT, P Bentzen, MJ Unwin, TP Quinn. 2002. Reconstructing recent divergence: evaluating non-equilibrium population structure in New Zealand chinook salmon. Mol. Ecol. 11:739-754.
Laidre, KL, MP Heide-Jørgensen, R Dietz. 2002. Diving behavior of narwhals (Monodon monoceros) at two coastal localities in the Canadian High Arctic. Can. J. Zool. 80:624-635.
Laidre, KL, RJ Jameson, SJ Jeffries, RC Hobbs, CE Bowlby, GR VanBlaricom. 2002. Developing carrying capacity estimates for sea otters (Enhydra lutris kenyoni) in Washington State. Wildl. Soc. Bull. Winter 2002.
Laidre, KL, RJ Jameson, SJ Jeffries, RC Hobbs, CE Bowlby, GR VanBlaricom. 2002. Estimates of carrying capacity for sea otters in Washington State. Wildl. Soc. Bull. 30:1172-1181.
Luppi, T, E Spivak, K Anger, JL Valero. 2002. Patterns and processes of Chasmagnathus granulata and Cyrtograpsus angulatus (Brachyura: Grapsidae) recruitment in Mar Chiquita Coastal Lagoon, Argentina. Est., Coast. Shelf Sci. 55:287-297.
Mode, NA, LL Conquest, DA Marker. 2002. Incorporating prior knowledge in environmental sampling: ranked set sampling and other double sampling procedures. Environmetrics 13:513-521.
Moore, JD, CA Finley, TT Robbins, CS Friedman. 2002. Withering syndrome and restoration of southern California abalone populations. CalCOFI 43:112-117.
Morley, SA, JR Karr. 2002. Assessing and restoring the health of urban streams in the Puget Sound basin. Cons. Biol. 16:1498-1509.
Myers, RA, NJ Barrowman, R Hilborn, DG Kehler. 2002. Inferring Bayesian priors with limited direct data: applications to risk analysis. N. Am. J. Fish. Mgmt. 22:351-364.
Naiman, RJ, RE Bilby, DE Schindler, and JM Helfield. 2002. Pacific salmon, nutrients, and the dynamics of freshwater and riparian ecosystems. Ecosystems 5:399-417.
Naiman, RJ, SE Bunn, C Nilsson, GE Petts, G Pinay, LC Thompson. 2002. Legitimizing fluvial ecosystems as users of water: An overview. Environ. Mgmt. 30(4):455-467
Naish KA, LK Park. 2002. Linkage relationships for 35 new microsatellite loci in chinook salmon. Oncorhynchus tshawytscha. Anim. Genet. 33:316-318.
Nowak, GM, TP Quinn. 2002. Diel and seasonal patterns of horizontal and vertical movements of telemetered cutthroat trout in Lake Washington, Washington. Trans. Am. Fish. Soc. 131:452-462.
O'Keefe, TC, RT Edwards. 2002. Evidence for hyporheic transfer and storage of marine-derived nutrients in sockeye streams in southwest Alaska. Proceedings of the Restoring Nutrients to Salmonid Ecosystems Conference. Eugene, Oregon. Am. Fish. Soc. 33:99-107.
Parrish, JK, SV Viscido, D Grünbaum. 2002. Self-organized fish schools: An Examination of emergent properties. Biol. Bull. 202:296-305.
Pierce, AL, KD Shearer, DM Baker, WW Dickhoff. 2002. An autumn profile of growth regulatory hormones in chinook salmon (Oncorhynchus tshawytscha). Fish Physiol. Biochem. 25:81-86.
Pinay, G, JC Clement, RJ Naiman. 2002. Basic principles and ecological consequences of changing water regimes on nitrogen cycling in fluvial systems. Environ. Mgmt. 30:481-491.
Pinay, G, TC O'Keefe, RT Edwards, RJ Naiman. 2002. Potential denitrification activity in the landscape of a western Alaska drainage basin. Ecosystems.
Plisetskaya, EM, VM Bondareva, JBK Leonard, JM Conlon, TP Mommsen, JT Silverstein. 2002. Measurement of channel catfish (Ictalurus punctatus) plasma in insulin in species-specific radioimmunoassay. Fish Physiol. Biochem. 25:71-80.
Punt, AE, JM Breiwick. 2002. A framework for evaluating Strike Limit Algorithms for populations reduced to small numbers. J. Cetac. Res. Mgmt 4:165-177.
Punt, AE, DS Butterworth. 2002. An examination of certain of the assumptions made in the Bayesian approach used to assess the eastern North Pacific stock of gray whales (Eschrichtius robustus). J. Cetac. Res. Mgmt. 4:99-110.
Punt, AE, ADM Smith, G Cui. 2002. Evaluation of management tools for Australia's South East fishery: 1. Modelling the South East fishery taking account of technical interactions. Mar. Freshwat. Res. 53:615-629.
Punt, AE, Wade, PR. 2012. Population status of the eastern North Pacific stock of gray whales in 2009. J. Cetacean Res. Manage. 12(1): 15–28.
Punt, AE, TI Walker, JD Prince. 2002. Assessing the management-related benefits of fixed-station fishery-independent surveys in Australia's Southern Shark Fishery. Fish. Res. 55:281-295.
Quinn, TP, JA Peterson, VF Gallucci, WK Hershberger, EL Brannon. 2002. Artificial selection and environmental change: countervailing factors affecting the timing of spawning by coho and chinook salmon. Trans. Am. Fish. Soc. 131:591-598.
Robards, MD, TP Quinn. 2002. The migratory timing of adult summer-run steelhead in the Columbia River over six decades of environmental change. Transactions of the American Fisheries Society 131:523-536.
Roegner, GC, BM Hickey, JA Newton, AL Shanks, DA Armstrong. 2002. Wind-induced plume and bloom intrusions into Willapa Bay, Washington. Limnol. Oceanogr. 47:1033-1042.
Schindler, D, TE Essington, JF Kitchell, C Boggs, R Hilborn. 2002. Sharks and tunas: fisheries impacts on predators with contrasting life histories. Ecol. Applic. 12:735-748.
Sebens, KP. 2002. Energetic constraints, size gradients and size limits in benthic marine invertebrates. 42:853-861. doi:10.1093/icb/42.4.853.
Shima, M, AB Hollowed, GR VanBlaricom. 2002. Changes over time in the spatialdistribution of walleye pollock (Theragra chalcogramma) in the Gulf of Alaska, 1984-1996. Fish. Bull. 100:307-323.
Skalski, JR, D Mathur, PG Heisey. 2002. Effects of turbine operating efficiency on smolt passage survival. N. Am. J. Fish. Mgmt. 22:493-500.
Skalski, JR, JJ Millspaugh. 2002. Generic variance expressions, precision, and sampling optimization for the sex-age-kill model of population reconstruction. J. Wildl. Mgmt. 55:1308-1316.
Skalski, JR, R Townsend, J Lady, AE Giorgi JR Stevenson. 2002. Estimating route-specific passage and survival probabilities at a hydroelectric project from smolt radiotelemetry studies. Can. J. Fish. Aquat. Soc. 59: 1385-1393.
Smith, SG, WD Muir, JG Williams, JR Skalski. 2002. Factors associated with travel time and survival of migrant yearling chinook salmon and steelhead in the Lower Snake River. N. Am. J. Fish. Mgmt. 22:385-405.
Strayer, DL, RE Beighley, LC Thompson, S Brooks, C Nilsson, G Pinay, RJ Naiman. 2002. Effects of land-cover change on stream ecosystems: roles of empirical models and scaling issues. Ecosystems.
Sun, T, GM Pigott, RP Herwig. 2002. Lipase-assisted concentration of n-3 polyunsaturated fatty acids from viscera of farmed Atlantic salmon (Salmo salar L.). J. Food Sci. 67:130-136.
Toft, J.D., J.R. Cordell, and W.C. Fields. 2002. New records of crustaceans (Amphipoda, Isopoda) in the Sacramento/San Joaquin Delta, California, and application of criteria for introduced species. J. Crust. Biol. 22(1):190-200.
Tupper, MH, K Wickstrom, R Hilborn, CM Roberts, JA Bohnsack, F Gell, JP Hawkins, R Goodridge. 2002. Marine reserves and fisheries management. Science 295:1233-1235. (in Letters)
Utter, FM. 2002. Students' angle column: Some accumulated perspectives on writing and editing. Fisheries 27:34-35.
Utter, F, J Epifanio. 2002. Marine aquaculture: genetic potentialities and pitfalls. Rev. Fish Biol. Fish. 12:59-77.
van Oosterhout, C, RE Trigg, GR Carvalho, AE Magurran, L Hauser, PW Shaw. 2002. Inbreeding depression and genetic load of sexually selected traits: How the guppy lost its spots. J. Evol. Biol. 16:273-281.
Wang, S, JJ Hard, F Utter. 2002. Genetic variation and fitness in salmonids. Cons. Genet. 3:321-333.
Wang, S, JJ Hard, F Utter. 2002. Salmonid inbreeding: a review. Rev. Fish Biol. Fish. 11:301-319.
Weetman, D, L Hauser, GR Carvalho. 2002. Reconstruction of microsatellite mutation history reveals a strong and consistent deletion bias in invasive clonal snails, Potamopyrgus antipodarum. Genetics 162:813-822.
2003
Abe, S, H Kojima, N Davis, T Nomura, S Urawa. 2003. Molecular identification of parental species in a salmonid hybrid caught in the central Bering Sea. Fish Gen. Breed. Sci. (Suisan Ikushu) 33:41-48.
Armstrong, DA, C Rooper, D Gunderson. 2003. Estuarine production of juvenile Dungeness crab (Cancer magister) and contribution to the Oregon–Washington coastal fishery. Estuaries 26:1174-1188.
Ballentyne, AP, MT Brett, DE Schindler. 2003. The importance of dietary phosphorus and highly unsaturated fatty acids for sockeye (Oncorhynchus nerka) growth in Lake Washington- a bioenergetics approach. Can. J. Fish. Aquat. Sci. 60:12-22.
Barrowman, NJ, RA Myers, R Hilborn, DG Kehler, CA Field. 2003. The variability among populations of coho salmon in the maximum reproductive rate and depensation. Ecol. Appl. 13:784-793.
Bechtold, JS, RT Edwards, RJ Naiman. 2003. Biotic versus hydrologic control over seasonal nitrate leaching in a floodplain forest. Biogeochemistry 63:53-72.
Bogatov, VV, TW Pietsch, YN Zhuravlev, SY Storozhenko, AS Lelej, VY Barkalov, SK Kholin, LA Prozorova. 2003. Patterns of origin of the terrestrial and freshwater biota of the Kuril Archipelago. Bull. Far East. Br., Russ. Acad. Sci. 3: 9-18.
Breen, PA, R Hilborn, M Maunder, S Kim. 2003. Comparing alternative harvest rules to minimise the effects of squid fishery bycatch on Hooker's sea lions (Phocarctos hookeri) in New Zealand. Can. J. Fish. Aquat. Sci. 60:527:541.
Brodeur, RD, KW Myers, JH Helle. 2003. Research conducted by the United States on the early ocean life history of Pacific salmon. N. Pac. Anadr. Fish Comm. Bull. 3:89-131.
Burger, J, TM Leschine, M Greenberg, JR Karr, M Gochfeld, CW Powers. 2003. Forum: Shifting priorities at the Department of Energy's bomb factories: protecting human and ecological health. Environ. Mgmt. 31:157-167.
Butterworth, DS, JN Ianelli, R Hilborn. 2003. A statistical model for stock assessment of southern bluefin tuna with temporal changes in selectivity. S. African J. Mar. Sci. 25:331-361.
Chaiyapechara, S, KKM Liu, FT Barrows, RW Hardy, FM Dong. 2003. Proximate composition, lipid oxidation, and sensory characteristics of fillets from rainbow trout Oncorhynchus mykiss fed diets containing 10% to 30% lipid. J. World Aquacult. Soc. 34:366-277.
Clemmesen, C, V Bühler, GR Carvalho, R Cae, G Evans, L Hauser, WF Hutchinson, WF Kjesbu, H Mempel, E Moskness, H Otteraa, H Paulsen, A Thoresen, T Svaasand. 2003. Variability in condition and growth of Atlantic cod larvae and juveniles reared in mesocosms: environmental and maternal effects. J. Fish Biol. 62:706-723.
Cooper, AB, R Hilborn, JW Unsworth. 2003. An approach for population assessment in the absence of abundance indices. Ecol. Appl. 13:814-828.
Dichmont, CM, AE Punt, A Deng, Q Dell, W Venables. 2003. Application of a weekly delay-difference model to commercial catch and effort data for tiger prawns in Australia's northern prawn fishery. Fish. Res. 65:335-350.
Dong, FM, AR Cook, RP Herwig. 2003. High hydrostatic pressure treatment of finfish to inactivate Anisakis simplex. J. Food Protect. 66:1924-1926.
Epifanio, J, G Haas, K Pratt, B Rieman, P Spruell, C Stockwell, F Utter, W Young. 2003. Integrating conservation genetic considerations into conservation planning: a case study of bull trout in the Lake Pend Oreille–lower Clark Fork River system. Fisheries 28:10-24.
Fanshawe, S, GR VanBlaricom, AA Shelly. 2003. Restored to pcarnivores as detriments to the performance of marine protected areas intended for fishery sustainability: a case study red abalones and sea otters. Cons. Biol. 17:273-283.
FerrierPages, C, J Witting, E Tambutte, KP Sebens. 2003. Effect of natural zooplankton feeding on the tissue and skeletal growth of the scleractinian coral Stylophora pistillata. Coral Reefs. 22:229-240. doi:10.1007/s00338-003-0312-7.
Flynn, L, R Hilborn, AE Punt. 2003. Identifying the spatial distribution of stocks of migrating adult sockeye salmon using age composition data. Alaska Fish. Res. Bull. 10:50-60.
Friedman, CS, CA Finley. 2003. Anthropogenic introduction of the etiological agent of withering syndrome into northern California abalone populations via conservation efforts. Can. J Fish. Aquat. Sci. 60:1424-1431.
Friedman, CS, G Trevelyan, TT Robbins, EP Mulder, R Fields. 2003. Development of an oral administration of oxytetracycline to control losses due to withering syndrome in cultured red abalone Haliotis rufescens. Aquaculture 224:1-23.
Gomez-Uchida, D, D Weetman, L Hauser, R Galleguillos, MRetamal. 2003. Allozyme and AFLP analysis of genetic population structure in the hairy edible crab Cancer setosus from the Chilean coast. J. Crustac. Biol. 23:486-494.
Gunderson, DR, M Zimmermann, DG Nichol, K Pearson. 2003. Indirect estimates of natural mortality rate for arrowtooth flounder (Atheresthes stomias) and darkblotched rockfish (Sebastes crameri). Fish. Bull. 101:175-182.
Hale, RS, JK Horne, DJ Degan, EL Conners. 2003. Using acoustics to estimate paddlefish Polyodon spathula abundance. Trans. Am. Fish. Soc. 132:746-758.
Hazen, EL, JK Horne. 2003. A method for evaluating the effects of biological factors on fish target strength. ICES J. Mar. Sci. 60:555-562.
Heidelberg, K, J Purcell, KP Sebens. 2003. Composition and sources of near reef zooplankton on a Jamaican fore-reef. Coral Reefs 23:263-280. doi:10.1007/s00338-004-0375-0.
Helfield, JM, RJ Naiman. 2003. Effects of salmon-derived nitrogen on riparian forest growth and implications for stream productivity: Reply. Ecology 84:3399-3401.
Hilborn, R. 2003. The state of the art in stock assessment: where we are and where we are going. Scientia Marina 67:15-20.
Hilborn, R, TA Branch. B Ernst, A Magnusson, CV Minte-Vera, MD Scheuerell, JL Valero. 2003. State of the world's fisheries. Ann. Rev. Environ. Resourc. 28:359-399.
Hilborn, R, TP Quinn, DE Schindler, DE Rogers. 2003. Biocomplexity and fisheries sustainability. Proc. Nat. Acad. Sci. 100:6564-6568.
Holsman, KK, DA Armstrong, DA Beauchamp, JR Ruesink. 2003. The necessity for intertidal foraging by estuarine populations of subadult Dungeness crab, Cancer magister: evidence from a bioenergetics model. Estuaries 26(4B):1155-1173.
Horne, JK. 2003. Influence of ontogeny, physiology, and behaviour on target strength of Walleye pollock (Theragra chalcogramma). ICES J. Mar. Sci. 60:1063-1074.
Judd, NL, JR Karr, WC Griffith, EM Faustman. 2003. Challenge in defining background levels for human and ecological risk assessments. Human Ecol. Risk Assess. 9:1623-1632.
Karr, JR, DN Kimberling. 2003. A terrestrial arthropod index of biological integrity for shrub-steppe landscapes. Northw. Sci. 77:202-213.
Kinzey, D, T Gerrodette. 2003. Distance measurements using binoculars from ships at sea: accuracy, precision and effects of refraction. J. Cetac. Res. Mgmt. 5(2):159–171.
Kloser, RJ, JK Horne. 2003. Characterizing uncertainty in target strength measurements of a deepwater fish: orange roughy (Hoplostethus atlanticus). ICES J. Mar. Sci. 60:516-523.
Latterell, JJ, R J Naiman, BR Fransen, PA Bisson. 2003. Physical constraints on trout (Oncorhynchus spp.) distribution in the Cascade Mountains: A comparison of logged and unlogged streams. Can. J. Aquat. Fish. Sci. 60:1007-1017.
Magnusson, A, R Hilborn. 2003. Estuarine influence on survival rates of coho (Oncorhynchus kisutch) and chinook salmon (Oncorhynchus tshawytscha) released from hatcheries on the U.S. Pacific coast. Estuaries 25:1094-1103.
Major WW, CE Grue, JM Grassley, LL Conquest. 2003. Mechanical and chemical control of smooth cordgrass in Willapa Bay, Washington. J. Aquat. Plant Mgmt. 41:6-12.
Mazur, MM, DA Beauchamp. 2003. A comparison of visual prey detection among species of piscivorous salmonids: effects of light and low turbidities. Environ. Biol. Fish. 67:397-405.
McLean, JE, P Bentzen, TP Quinn. 2003. Differential reproductive success of sympatric, naturally spawning hatchery and wild steelhead trout (Oncorhynchus mykiss) through the adult stage. Can. J. Fish. Aquat. Sci. 60:433-440.
Moore, JW, DE Schindler, MD Scheuerell, D Smith, J Frodge. 2003. Lake eutrophication at the urban fringe, Seattle region, USA. Ambio 32:13-18.
Orr, AJ, JL Laake, MI Dhruv, AS Banks, RL DeLong, HR Huber. 2003 Comparison of processing pinniped scat samples using a washing machine and nested sieves. Wildl. Soc. Bull. 31:253-257.
Parenti, P, and TW Pietsch. 2003. Ostracion knorrii Walbaum, 1792, an invalid senior synonym of the striated frogfish Antennarius striatus (Shaw and Nodder, 1794). Copeia 2003:187-189.
Parrish, JK, SG Zador. 2003. Seabirds as indicators: An exploratory analysis of physical forcing in the Pacific Northwest coastal environment. Estuaries 26:1044-1057.
Pearson, KE, DR Gunderson. 2003. Reproductive biology and ecology of shortspine thornyhead rockfish, Sebastolobus alascanus, and longspine thornyhead rockfish, S. altivelis, from the northeastern Pacific Ocean. Environ. Biol. Fish. 67:117-136.
Pietsch, TW, VV Bogatov, K Amaoka, YN Zhuravlev, VY Barkalov, S Gage, H Takahashi, AS Lelej, SY Storozhenko, N Minakawa, DJ Bennett, TR Anderson, M Ôhara, LA Prozorova, Y Kuwahara, SK Kholin, M Yabe, DE Stevenson, EL MacDonald. 2003. Biodiversity and biogeography of the islands of the Kuril Archipelago. J. Biogeography 30(9):1297-1310.
Pinay, G, TC O’Keefe, RT Edwards, RJ Naiman. 2003. Potential denitrification activity in the landscape of a western Alaska drainage basin. Ecosystems 6:336-343.
Punt, AE. 2003. Evaluating the efficacy of managing West Coast groundfish resources through simulations. Fish. Bull. 101:860-873.
Punt, AE. 2003. Extending production models to include process error in the population dynamics. Can. J. Fish. Aquat. Sci. 60:1217-1228.
Punt, AE. 2003. The performance of a size-structured stock assessment method in the face of spatial heterogeneity in growth. Fish. Res. 65:391-409.
Punt, AE, DS Butterworth. 2003. An initial application of the spatial structure framework for North Atlantic bluefin developed at the September 2001 Bluefin Mixing Workshop using simple age-aggregated models. Col. Vol. Sci. Pap. ICCAT 55:1041-1054.
Quinn, TP, SM Gende, GT Ruggerone, DE Rogers. 2003. Density-dependent predation by brown bears (Ursus arctos) on sockeye salmon (Oncorhynchus nerka). Can. J. Fish. Aquat. Sci. 60:553-562.
Rasmussen, C, CO Ostberg, DR Clifton, JL Holloway, RJ Rodriguez. 2003. Identification of a genetic marker that discriminates ocean-type and stream-type chinook salmon in the Columbia River Basin. Trans. Am. Fish. Soc. 132:131-142.
Roegner, GC, DA Armstrong, BM Hickey, AL Shanks. 2003. Ocean distribution of Dungeness crab megalopae and recruitment patterns to estuaries in southern Washington State. Estuaries 26:1058-1070.
Rooper, CN, DR Gunderson, DA Armstrong. 2003. Patterns in use of estuarine habitat by juvenile English sole (Pleuronectes vetulus) in four eastern North Pacific estuaries. Estuaries 26:1142-1154.
Ruesink, JL, GC Roegner, BR Dumbauld, JA Newton, DA Armstrong. 2003. Contributions of coastal and watershed energy sources to secondary production in a northeastern Pacific estuary. Estuaries 26:1079-1093.
Ruggerone, GT, M Zimmermann, KW Myers, JL Nielsen, DE Rogers. 2003. Competition between Asian pink salmon (Oncorhynchus gorbuscha) and Alaskan sockeye salmon (O. nerka) in the North Pacific Ocean. Fish. Oceanogr. 12:209-219.
Ruzycki, JR, DA Beauchamp, D L Yule. 2003. Effects of introduced lake trout on native cutthroat trout in Yellowstone Lake. Ecol. Appl. 13:23-37.
Salinger, DH, JJ Anderson, OS Hamel. 2003. A parameter estimation routine for the vitality-based survival model. Ecol. Model. 166:287-294.
Scheuerell, MD, DE Schindler. 2003. Diel vertical migration by juvenile sockeye salmon: empirical evidence for the antipredation window. Ecology 84:1713-1720.
Schindler, DE, MD Scheuerell, JW Moore, SM Gende, TB Francis, WJ Palen. 2003. Pacific salmon and the ecology of coastal ecosystems. Front. Ecol. Environ. 1:31-37.
Schwertner, MA, KKM Liu, FT Barrows, RW Hardy, FM Dong. 2003. Performance of post-juvenile rainbow trout Oncorhynchus mykiss fed diets manufactured by different processing techniques. J. World Aquacult. Soc. 34:162-174.
Sebens, KP, B Helmuth, E Carrington, B Agius. 2003. Effects of water flow on growth and energetics of the scleractinian coral Agaricia tenuifolia, in Belize. Coral Reefs. 22:35-47. doi:10.1007/s00338-003-0277-6.
Smith, BC, CA Curran, KW Brown, JJ Cabarrus, JB Gown, JK McIntyre, EE Moreland, VL Wong, JM Grassley, CE Grue. 2003. Toxicity of four surfactants to juvenile rainbow trout: implications for use over water. Bull. Environ. Contam. Toxicol. 72:647-654.
Speckman, SG, JF Piatt, AM Springer. 2003. Deciphering the social structure of Marbled Murrelets from behavioral observations at sea. Waterbirds 26:266-274.
Stewart, IJ, R Hilborn, TP Quinn. 2003. Coherence of observed adult sockeye salmon abundance within and among spawning habitats in the Kvichak River watershed. Alaska Fish. Res. Bull. 10:28-41.
Stewart, IJ, TP Quinn, P Bentzen. 2003 Evidence for fine-scale natal homing among island beach spawning sockeye salmon, Oncorhynchus nerka. Environ. Biol. Fishes 67:77-85.
Strayer, DL, RE Beighley, LC Thompson, S Brooks, C Nilsson, G Pinay, RJ Naiman. 2003. Effects of land-cover change on stream ecosystems: roles of empirical models and scaling issues. Ecosystems 6:407-423.
Toft, JD, CA Simenstad, JR Cordell, LF Grimaldo. 2003. The effects of introduced water hyacinth on habitat structure, invertebrate assemblages, and fish diets. Estuaries 26:746-758.
Towler, RL, JM Jech, JK Horne. 2003. Visualizing fish movement, behaviour, and acoustic backscatter. Aquat. Liv. Resourc. 16:277-282.
Unwin, MJ, MT Kinnison, NC Boustead, TP Quinn. 2003 Genetic control over survival in Pacific salmon (Oncorhynchus spp.): experimental evidence between and within populations of New Zealand chinook salmon (O. tshawytscha) Can. J. Fish. Aquat. Sci. 60:1-11.
Vollestad, LA, TP Quinn. 2003. Trade-off between growth rate and aggression in juvenile coho salmon, Oncorhynchus kisutch. Anim. Behav. 66:561-568.
Watters, GM, RJ Olson, RC Francis, PC Fiedler, JJ Polovina, SM Reilly, KY Aydin, CH Boggs, TE Essington, CJ Walters, JF Kitchell. 2003. Physical forcing and the dynamics of the pelagic ecosystem in the eastern tropical Pacific: simulations with ENSO-scale and global-warming climate drivers. Can. J. Fish. Aquat. Sci. 60: 1161-1175.
2004
Arhonditsis GB, M Winder, MT Brett, DE Schindler. 2004. Patterns and mechanisms of phytoplankton variability in Lake Washington (USA). Wat. Res. 38:4013-4027.
Arhonditsis, GB, MT Brett, CL DeGasperi, DE Schindler. 2004. Effects of climatic variability on the thermal properties of Lake Washington. Limnol. Oceanogr.49:256-270.
Au, WL, JKB Ford, JK Horne, KA Allman. 2004. Echolocation signals of free-ranging killer whales (Orcinus orca) and modeling of foraging for chinook salmon (Oncorhynchus tshawytscha). J. Acoust. Soc. Am. 115:901-909.
Beauchamp, DA, CJ Sergeant, MM Mazur, JM Scheuerell, DE Schindler, MD Scheuerell, KL Fresh, DE Seiler, TP Quinn. 2004. Spatial–temporal dynamics of early feeding demand and food supply for sockeye salmon Fry in Lake Washington. Trans. Am. Fish. Soc. 133:1014-1032.
Beschta, RL, JJ Rhodes, JB Kauffman, RE Gresswell, GW Minshall, JR Karr, DA Perry, FR Hauer, CA Frissell. 2004. Postfire management on forested public lands on the western United States. Cons. Biol. 18:957-967.
Boatright, C, T Quinn, R Hilborn. 2004. Timing of adult migration and stock structure for sockeye salmon in Bear Lake, Alaska. Trans. Am. Fish. Soc. 133:911-921.
Booth, DB, JR Karr, S Schauman, CP Konrad, SA Morley, MG Laron, SJ Burges. 2004. Reviving urban streams: land use, hydrology, biology, and human behavior. J. Am. Wat. Res. Assoc. 40:1351-1364.
Branch, TA, K Matsuoka, T Miyashita. 2004. Evidence for increases in Antarctic blue whales based on Bayesian modelling. Mar. Mamm. Sci. 20:726-754.
Brannon, EL, MS Powell, TP Quinn, A Talbot. 2004. Population structure of Columbia River Basin chinook salmon and steelhead trout. Rev. Fish. Sci. 12:99-232.
Browman, HI, PM Cury, R Hilborn, S Jennings, HK Lotze, PM Mace, S Murawski, D Pauly, M Sissenwine, KI Stergiou, D Zeller. 2004. Perspectives on ecosystem-based approaches to the management of marine resources Mar. Ecol. Prog. Ser. 274:269-303.
Carlson, SM, HB Rich, Jr, TP Quinn. 2004. Reproductive life-span and sources of mortality for alternative male life-history strategies in sockeye salmon, Oncorhynchus nerka. Can. J. Zool. 82:1878–1885.
Cope, JM. 2004. Population genetics and phylogeography of the blue rockfish (Sebastes mystinus) from Washington to California. Can. J. Fish. Aquat. Sci. 61:332-234.
Curran CA, Grassley JM, Grue CE. 2004 Toxicity of R-11® surfactant to juvenile rainbow trout: Does size matter? Bull. Environ. Contam. Toxicol. 72:401-408
Décamps, H, G Pinay, RJ Naiman, and 11 others. 2004. Riparian zones: where biogeochemistry meets biodiversity in management practice. Polish J. Ecol. 52:3-18.
Dickerson, BR, MF Willson, P Bentzen, TP Quinn. 2004. Size-assortative mating in salmonids: negative evidence for pink salmon in natural conditions. Anim Behav 68:381-385.
Elliott, SR, RJ Naiman, PA Bisson. 2004. The effect of riparian disturbance on physicochemical parameters of seston at summer baseflow. Northw. Sci. 78:150-157.
Essington, TE. 2004. Getting the right answer from the wrong model: evaluating the sensitivity of multispecies fisheries advice to uncertain species interactions. Bull. Mar. Sci. 74:563-581.
Essington, TE, S Hansson. 2004. Predator-dependent functional response and interaction strengths in a natural food web. Can. J. Fish. Aquat. Sci. 61:2227-2236.
Estes, RM, CS Friedman, RA Elston, RP Herwig. 2004. Pathogenicity testing of shellfish hatchery bacterial isolates on Pacific oyster Crassostrea gigas larvae. Dis. Aquat. Org. 58:223-230.
Flynn, L, R Hilborn. 2004. Test fishery indices for sockeye salmon (Oncorhynchus nerka) as affected by age composition and environmental variables. Can. J. Fish. Aquat. Sci. 61:80-92.
Garono, RJ, CA Simenstad, R Robinson, H Ripley. 2004. Using high spatial resolution hyperspectral imagery to map intertidal habitat structure in Hood Canal, Washington, U.S.A. Can. J. Remote Sens. 30:54-63.
Gauthier, S, JK Horne. 2004. Acoustic characteristics of forage fish species in the Gulf of Alaska and Bering Sea. Can. J. Aquat. Fish. Sci. 61:1839-1850.
Gauthier, S, JK Horne. 2004. Potential acoustic discrimination of boreal fish assemblages. ICES J. Mar. Sci. 61:836-845.
Gende, SM, TP Quinn. 2004. The relative importance of prey density and social dominance in determining energy intake by bears feeding on Pacific salmon. Can. J. Zool. 82:75-85.
Gende, SM, TP Quinn, R Hilborn, AP Hendry, B Dickerson. 2004. Brown bears selectively kill salmon with higher energy content but only in habitats that facilitate choice. Oikos 104:518-528.
Gende, SM, TP Quinn, MF. Willson, R Heintz, TM Scott. 2004. Magnitude and fate of salmon-derived nutrients and energy in a coastal stream ecosystem. J. Freshwat. Ecol. 19:149-160.
Gerber, LR, KE Buenau, GR VanBlaricom. 2004. Density dependence and risk of extinction in a small population of sea otters. Biodivers. Cons. 13:2741-2757.
Halpenny, CM, RM Kocan, PK Hershberger. 2004. Prevalence of the parasitic copepod Haemobaphes intermedius on juvenile buffalo sculpins from Washington State. J. Aquat. Anim. Health 16(3):161-163.
Halver, JE, SM Felton, R Zbanyszek. 2004. Carcass selenium loss as an indicator of stress in barge transported chinook salmon (Oncorhynchus tshawytscha Walbaum) smolts. Aquacult. Res. 35:1099-1103.
Hamel, NJ, JK Parrish, LL Conquest. 2004. Effects of tagging on behavior, provisioning, and reproduction in the common murre (Uria aalge), a diving seabird. The Auk 121:1161-1171.
Hazen, EL, JK Horne. 2004. Comparing modeled and measured target strength variability of walleye pollock, Theragra chalcogramma. ICES J. Mar. Sci. 61:363-377.
Helser, TE, AE Punt, RD Methot. 2004. A generlized linear mixed model analysis of a multi-vessel fishery resource survey. Fish. Res. 70:251-264.
Hilborn, R. 2004. Ecosystem-based fisheries management: the carrot or the stick? In HI Browman, KI Stergiou (coordinators), Perspectives on ecosystem-based approaches to the management of marine resources. Mar. Ecol. Prog. Ser. 274:275-278.
Hilborn, R., AE Punt, J Orensanz. 2004. Beyond band-aids in fisheries management: fixing world fisheries. Bull. Mar. Sci. 74:493-507.
Hilborn, R, K Stokes, J-J Maguire, T Smith, LW Botsford, M Mangelf, J Orensanz, A Parma, J Rice, J Bell, KL Cochrane, S Garcia, SJ Hall, GP Kirkwood, K Sainsbury, G Stefansson, C Walters. 2004. When can marine reserves improve fisheries management? Ocean Coast. Mgmt. 47:197-205.
Jensen, GC. 2004. Status of Eualus pusiolus in the northeastern Pacific, with a description of a new species of Eualus (Decapoda: Hippolytidae). J. Crust. Biol. 24:463-469.
Jensen, GC, DA Armstrong. 2004. The occurrence of the Japanese mitten crab, Eriocheir japonica (de Haan), on the west coast of North America. Cal. Fish Game 90:94-99.
Jensen, PC, P Bentzen. 2004. Isolation and inheritance of microsatellite loci in the Dungeness crab (Brachyura: Cancridae: Cancer magister). Genome 47:325-331.
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Pietsch, TW. 2004. A new species of the anglerfish genus Lophiocharon Whitley (Lophiiformes: Antennariidae) from Australian waters. Rec. Aust. Mus. 56:159-162.
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Pietsch, TW, H-C Ho, H-M Hong. 2004. Revision of the deep-sea anglerfish genus Bufoceratias Whitley (Lophiiformes: Ceratioidei: Diceratiidae), with description of a new species from the Indo-West Pacific Ocean. Copeia 2004:98-107.
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Baldwin, ZH. 2005. A new species of bullhead shark, Genus Heterodontus (Heterodontiformes: Heterodontidae), from Oman. Copeia 2005:262-264.
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Pietsch, TW. 2005. A new species of the ceratioid anglerfish genus Lasiognathus Regan (Lophiiformes: Thaumatichthyidae) from the Eastern North Atlantic off Madeira. Copeia 2005(1): 77-81.
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Pietsch, TW, M Shimazaki. 2005. Revision of the deep-sea anglerfish genus Acentrophryne Regan (Lophiiformes: Ceratioidei: Linophrynidae), with the description of a new species from off Peru. Copeia 2005(2): 146-151.
Piner, KR, MA Haltuch, JR Wallace. 2005. Preliminary use of oxygen stable isotopes and the 1983 El Niño to assess the accuracy of aging black rockfish (Sebastes melanops). Fish. Bull. 103:553–558.
Pribac, F, AE Punt, TI Walker, BL Taylor. 2005. Using length, age and tagging data in a stock assessment of a length selective fishery for gummy shark (Mustelus antarcticus). J. Northw. Atl. Fish. Soc. 35:267-290. doi:10.2960/J.v35.m521.
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Quinn, TP. 2005. Comment: Sperm competition in salmon hatcheries—the need to institutionalize genetically benign spawning protocols. Trans. Am. Fish. Soc. 134:1490-1494.
Quinn, TP, BR Dickerson, LA Vøllestad. 2005. Marine survival and distribution patterns of two Puget Sound hatchery populations of coho (Oncorhynchus kisutch) and chinook (Oncorhynchus tshawytscha) salmon. Fish. Res. 76:209-220.
Quinn, TP, KW Myers. 2005. Anadromy and the marine migrations of Pacific salmon and trout: Rounsefell revisited. Rev. Fish Biol. Fish. 14:421–442.
Romare, P, DE Schindler, MD Scheuerell, JM Scheuerell, AH Litt, JH Shepherd. 2005. Variation in spatial and temporal gradients in zooplankton spring development: the effect of climatic factors. Freshwat. Biol. 50:1007-1021.
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Roberson, NE, DK Kimura, DR Gunderson. 2005. Indirect validation of the age reading method for Pacific cod, Gadus macrocephalus, using otoiths from marked and recaptured fish. Fish. Bull. 103:153-160.
Robins, JB, CA Abrey, TP Quinn, DE Rogers. 2005. Lacustrine growth of juvenile pink salmon and a comparison with sympatric sockeye salmon. J. Fish Biol. 66:1671-1680.
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Schindler, DE, PR Leavitt, CS Brock, SP Johnson, PD Quay. 2005. Marine- derived nutrients, commercial fisheries, and production of salmon and lake algae in Alaska. Ecology 86:3225-3231.
Schindler, DE, DE Rogers, MD Scheuerell, CA Abrey. 2005. Effects of changing climate on zooplankton and growth of juvenile sockeye salmon in southwestern Alaska. Ecology 86:198-209.
Sharma, R, AB Cooper, R Hilborn. 2005. A quantitative framework for the analysis of habitat and hatchery practices on Pacific salmon. Ecol. Model. 183:231-250.
Simenstad, C, C Tanner, C Crandell, J White, J Cordell. 2005. Challenges of habitat restoration in a heavily urbanized estuary: evaluating the investment. J. Coast. Res. 40:6-23.
Springman, KR, G Kurath, JJ Anderson JM Emlen. 2005. Contaminants as viral cofactors: assessing indirect population effects. Aquat. Toxicol. 71:13-23.
van der Straaten, N, A Jacobson, D Halos, P Hershberger, AA Kocan, R Kocan. 2005. Prevalence and spatial distribution of intraerythrocytic parasite(s) in Puget Sound rockfish (Sebastes emphaeus) from the San Juan Archipelago, Washington (USA). J. Parasitol. 91:980-982.
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Winter, A, G Swartzman, L Ciannelli. 2005. Early- to late-summer population growth and prey consumption by age-0 pollock (Theragra chalcogramma), in two years of contrasting pollock abundance near the Pribilof Islands, Bering Sea. Fish. Oceanogr. 14:307-320.
Womble, JN, MF Willson, MF Sigler, BP Kelly, GR VanBlaricom. 2005. Distribution of Steller sea lions Eumetopias jubatus in relation to spring-spawning fish in SE Alaska. Mar. Ecol. Prog. Ser. 294:271-282.
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2006
Arthington, AH, SE Bunn, NL Poff, RJ Naiman. 2006. The challenge of providing environmental flow rules to sustain river ecosystems. Ecol. Applic. 16:1311-1318.
Badgley, BD, F Lipschultz,. KP Sebens. 2006. Nitrate uptake by the reef coral Diploria strigosa: effects of concentration, water flow, and irradiance. Mar. Biol. doi:149:229-238.10.1007/s00227-005-0180-5.
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Bañón, R, TW Pietsch, C-G Piñeiro. 2006. New record of Linophryne coronata (Lophiiformes, Linophrynidae) from the North-eastern Atlantic Ocean. Cybium 30(4):385-386.
Bechtold, JS, RJ Naiman. 2006. Soil nitrogen mineralization potential across a riparian toposequence in a semi-arid savanna. Soil Biol. Biogeochem. 38:1325-1333.
Bernhardt, E, SE Bunn, DD Hart, B Malmqvist, T Muotka, RJ Naiman, C Pringle, M Reuss, B van Wilgen. 2006. The challenge of ecologically sustainable water management. Wat. Pol. 8:475-479.
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Braid, BA, JD Moore, TT Robbins, RP Hedrick, RS Tjeerdema, CS Friedman. 2006. Health and survival of red abalone, Haliotis rufescens, under varying temperature, food supply, and exposure to the agent of withering syndrome. J. Invert. Pathol. 89(3):219-231.
Branch, T.A. 2006. Discards and revenues in multispecies groundfish trawl fisheries managed by trip limits on the U.S. west coast and by ITQs in British Columbia. Bull. Mar. Sci. 78:669-690.
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Branch, TA, K Rutherford, R Hilborn. 2006. Replacing trip limits with individual transferable quotas: implications for discarding. Mar. Pol. 30:281-292.
Brandon, JR, PR Wade. 2006. Assessment of the Bering-Chukchi-Beaufort Seas stock of bowhead whales using Bayesian model averaging. J. Cetac. Res. Mgmt. 8(3):225-239.
Brock, CS, PR Leavitt, DE Schindler, SP Johnson, JW Moore, PD Quay. 2006 Spatial variability of stable isotopes and fossil pigments in surface sediments of Alaskan coastal lakes: constraints on quantitative estimates of past salmon abundance. Limnol. Oceanogr. 51:1637-1647.
Burge, CA, FJ Griffin, CS Friedman. 2006. Summer mortality and herpes virus infections of the Pacific oyster, Crassostrea gigas, in Tomales Bay, California. Dis. Aquat. Organ. 72:31-43.
Bradford, AL, PR Wade, DW Weller, AM Burdin, YV Ivashchenko, GA Tsidulko, GR VanBlaricom, RL Brownell, Jr. 2006. Survival estimates of western gray whales Eschrichtius robustus incorporating individual heterogeneity and temporary emigration. Mar. Ecol. Prog. Ser. 315:293-307.
Buchanan, RA, JR Skalski. 2006. A migratory life-cycle release-recapture model for salmonid PIT-tag investigations. J. Agric. Biol. Environ. Stat. 12(3):325-345.
Buchanan, RA, JR Skalski, SG Smith. 2006. Estimating the effects of smolt transportation from different vantage points and management perspectives. N. Am. J. Fish. Mgmt. 26:460-472.
Buchheister, A, MT Wilson, RJ Foy, DA Beauchamp. 2006. Seasonal and geographic variation in condition and whole body energy content of juvenile walleye pollock in the Western Gulf of Alaska. Trans. Am. Fish. Soc. 135:897-907.
Campbell, B, J Dickey, B Beckman, G Young, A Pierce, H Fukada, P Swanson. 2006. Previtellogenic oocyte growth in salmon: relationships among body growth, plasma insulin-like growth factor-1, estradiol-17beta, follicle-stimulating hormone and expression of ovarian genes for insulin-like growth factors, steroidogenic-acute regulatory protein and receptors for gonadotropins, growth hormone, and somatolactin. Biol. Reprod. 75:34-44.
Carnevale, G, TW Pietsch. 2006. Filling the gap: a fossil frogfish, genus Antennarius (Teleostei, Lophiiformes, Antennariidae), from the Miocene of Algeria. J. Zool. 270:448-457.
Caruso, JH, H-C Ho, TW Pietsch. 2006. Chaunacops Garman, 1899, a senior objective synonym of Bathychaunax Caruso, 1989 (Lophiiformes: Chaunacoidei: Chaunacidae). Copeia 2006(1):120-121.
Chambers, MD, GR VanBlaricom, L Hauser, F Utter, CS Friedman. 2006. Genetic structure of black abalone (Haliotis cracherodii) populations in the California islands and central California coast: impacts of larval dispersal and decimation from Withering Syndrome. J. Exp. Mar. Biol. Ecol. 131:173-185
Cope, JM. 2006. Exploring intraspecific life history patterns in sharks. Fish. Bull. 104:311-320.
Cucherousset, J, J-M Paillisson, A Carpentier, M-C Eybert, JD Olden. 2006. Habitat use of an artificial wetland by the invasive catfish Ameiurus melas. Ecol. Freshwat. Fish 15:589-596.
Dellasala, DA, JR Karr, T Schoennagel, D Perry, RF Noss, D Lindenmayer, R Beschta, RL Hutto, ME Swanson, J Evans. 2006. Post-fire logging debate ignores many issues. Science 314:51-52.
Dichmont, CM, AR Denga, AE Punt, W Venables, M Haddon. 2006. Management strategies for short lived species: the case of Australia’s northern prawn fishery. 1. Accounting for multiple species, spatial structure and implementation uncertainty when evaluating risk. Fish. Res. 82:221-234.
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Dichmont, CM, AR Denga, AE Punt, W Venables, M Haddon. 2006. Management strategies for short lived species: the case of Australia’s northern prawn fishery. 3. Factors affecting management and estimation performance. Fish. Res. 82:235–245.
Dillingham, PW, JR Skalski, KE Ryding. 2006. Fine-scale geographic interactions between Steller sea lion (Eumetopias jubatus) trends and local fisheries. Can. J. Fish. Aquat. Sci. 63:107-119.
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Flynn, L, AE Punt, R Hilborn. 2006. A hierarchical model for salmon run reconstruction and application to the Bristol Bay sockeye salmon (Oncorhynchus nerka) fishery. Can. J. Fish. Aquat. Sci. 63:1564-1577.
Francis, TB, DE Schindler. 2006. Degradation of littoral habitats by residential development: woody debris in lakes of the Pacific Northwest and Midwest, United States. Ambio 35: 274-280.
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Gallucci, VF, IG Taylor, K Erzini. 2006. Conservation and management of exploited shark populations based on reproductive value. Can. J. Fish. Aquat. Sci. 63:931-942.
Gaston, AJ, SA Stockton, JL Smith. 2006. Species-area relationships and the impact of deer-browse in the complex phytogeography of the Haida Gwaii archipelago (Queen Charlotte Islands), British Columbia. Ecoscience 13:511-522.
Goodwin, RA, JM Nestler, JJ Anderson, LJ Weber, DP Loucks. 2006. Decoding movement patterns of fish for forecast simulation using individual-based modeling. Ecol. Model. 192:197-223.
Grafton, RQ, R Arnason, T Bjørndal, D Campbell, HF Campbell, CW Clark, R Connor, DP Dupont, R Hannesson, R Hilborn, JE Kirkley, T Kompas, DE Lane, GR Munro, S Pascoe, D Squires, SI Steinshamn, BR Turris, Q Weninger. 2006. Incentive-based approaches to sustainable fisheries. Can. J. Fish. Aquat. Sci. 63:699-710.
Hagen, IJ, M Kusakabe, G Young. 2006. Effects of ACTH and cAMP on steroidogenic acute regulatory protein (StAR) and P450 11b-hydroxylase messenger RNAs in rainbow trout interrenal cells: relationship with in vitro cortisol production. Gen. Comp. Endocrinol. 145:244-262.
Hampton, SE, MD Scheuerell, DE Schindler. 2006. Coalescence in the Lake Washington story: Interaction strengths in a planktonic food web. Limnol. Oceanogr. 51:2042-2051.
Hampton, SE, DE Schindler. 2006. Empirical evaluation of observation scale effects in community time series. Oikos 113:424-439.
Hauser, L, TR Seamons, M Dauer, KA Naish, TP Quinn. 2006. An empirical verification of population assignment methods by marking and parentage data: hatchery and wild steelhead (Oncorhynchus mykiss) in Forks Creek, Washington, USA. Mol. Ecol. 15:3157-3173.
Hauser, DDW, GR VanBlaricom, EE Holmes, RW Osborne. 2006. Evaluating the use of whalewatch data in determining killer whale (Orcinus orca) distribution patterns. J. Cetac. Res. Mgmt. 8(3):273-281.
Helfield, JM, RJ Naiman. 2006. Keystone interactions: salmon and bear in riparian forests of Alaska. Ecosystems 9:167-180.
Herwig, RP, JR Cordell, JC Perrins, PA Dinnel, RW Gensemer, WA Stubblefield, GM Ruiz, JA Kopp, ML House, WJ Cooper. 2006. Ozone treatment of ballast water on the oil tanker S/T Tonsina: chemistry, biology and toxicity. Mar. Ecol. Prog. Ser. 324:37-55.
Hilborn, R. 2006. Commentary: Salmon-farming impacts on wild salmon. Proc. Nat. Acad. Sci. 103:15277.
Hilborn, R. 2006. Defining success in fisheries and conflicts in objectives. Mar. Pol. . doi:10.1016/j.marpol.2006.05.014/
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Hilborn, R. 2006. Fisheries success and failure: the case of the Bristol Bay salmon fishery. Bull. Mar. Sci. 78:487-498.
Hilborn, R, P Arcese, P, M Borner, J Hando, G Hopcraft, M Loibooki, S Mduma, ARE Sinclair. 2006. Effective enforcement in a conservation area. Science. 314:1266-1266.
Hilborn, R, J Annala, DS Holland. 2006. The cost of overfishing and management strategies for new fisheries on slow-growing fish: orange roughy (Hoplostethus atlanticus) in New Zealand. Can. J. Fish. Aquat. Sci. 63:2149-2153.
Hilborn, R, F Micheli, GA De Leo. 2006. Integrating marine protected areas with catch regulation. Can. J. Fish. Aquat. Sci. 63:642-649.
Hobbs, NT, R Hilborn. 2006. Alternatives to statistical hypothesis testing in ecology: a guide to self teaching. Ecol. Applic. 16:5-19.
Hoberecht, LK, DJ Vos, GR VanBlaricom. 2006. A remote biopsy system used to sample steller sea lion (Eumetopias jubatus) blubber. Mar. Mamm. Sci. 22:683-689.
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Hunsicker, ME, TE Essington. 2006. Size-structured patterns of piscivory of the longfin inshore squid (Loligo pealeii) in the mid-Atlantic continental shelf ecosystem. Can. J. Fish. Aquat. Sci. 634:754-765.
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Pettit, NE, RJ Naiman. 2006. Flood-deposited wood creates regeneration niches for riparian vegetation on a semi-arid South African river. J. Veget. Sci. Science 17:525-534.
Pietsch, TW, ZH Baldwin. 2006. A revision of the deep-sea anglerfish genus Spiniphryne Bertelsen (Lophiiformes: Ceratioidei: Oneirodidae), with description of a new species from the Eastern North Pacific Ocean. Copeia 2006(3):403-410.
Pietsch, TW, AV Balushkin, VV Fedorov. 2006. New Records of the rare deep-sea anglerfish Diceratias trilobus Balushkin and Fedorov (Lophiiformes: Ceratioidei: Diceratiidae) from the Western Pacific and Eastern Indian Oceans. J. Ichthy. 46(Suppl. 1):97-100.
Pietsch, TW, JW Orr. 2006. Triglops dorothy, a new species of sculpin (Teleostei: Scorpaeniformes: Cottidae) from the southern Sea of Okhotsk. Fish. Bull. 104(2):238-246.
Punt, AE. 2006. Assessing the Bering–Chukchi–Beaufort Seas stock of bowhead whales using abundance data together with data on length or age. J. Cetac. Res. Mgmt. 8(2):127-137.
Punt, AE. 2006. The FAO precautionary approach after almost 10 years: have we progressed towards implementing simulation-tested feedback-control management systems for fisheries management? Nat. Res. Model. 19(4):441-464.
Punt, AE, NA Friday, TD Smith. 2006. Reconciling data on the trends and abundance of North Atlantic humpback whales within a population modelling framework. J. Cetac. Res. Mgmt. 8(2):145-159.
Punt, AE, DK Hobday, R Flint. 2006. Bayesian hierarchical modelling of maturity-at-length for rock lobsters, Jasus edwardsii, off Victoria, Australia. Mar. Freshwat. Res. 57:503-511.
Punt, AE, D Hobday, J Gerhard, VS Troynikov. 2006. Modelling growth of rock lobsters, Jasus edwardsii, off Victoria, Australia using models that allow for individual variation in growth parameters. Fish. Res. 82:119-130.
Punt, AE, DC Smith, GN Tuck, RD Methot. 2006. Including discard data in fisheries stock assessments: Two case studies from south-eastern Australia. Fish. Res. 79:239-250. doi:10.1016/j.fishres.2006.04.007.
Purcell, MK, KM Nichols, JR Winton, G Kurath, GH Thorgaard, P Wheeler, DJ Hansen, RP Herwig, LK Park. 2006. Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus. Molec. Immunol. 43:2089-2106.
Quinn, TP, P McGinnity, TF Cross. 2006. Long-term declines in body size and shifts in run timing of Atlantic salmon in Ireland. J. Fish Biol. 68:1713-1730.
Quinn, TP, IJ Stewart, CP Boatright. 2006. Experimental evidence of homing to site of incubation by mature sockeye salmon, Oncorhynchus nerka. Anim. Behav. 72:941-949.
Renner, HM, M Renner, JH Reynolds, AMA Harding, IL Jones, DB Irons, GV Byrd. 2006. Colony mapping: a new technique for monitoring crevice-nesting seabirds. The Condor 108:423–434.
Rich, HB, Jr, SM Carlson, BE Chasco, KC Briggs, TP Quinn. 2006. Movements of male sockeye salmon, Oncorhynchus nerka, on spawning grounds: effects of in-stream residency, density, and body size. Anim. Behav. 71:971-981.
Rooper, CN, DR Gunderson, DA Armstrong. 2006. Evidence for resource partitioning and competition in nursery estuaries by juvenile flatfish in Oregon and Washington. Fish. Bull. 104:616-623.
Rooper, CN, DR Gunderson, BM Hickey. 2006. An examination of the feasibility of passive transport from coastal spawning grounds to estuarine nursery areas for English sole. Est. Coast. Shelf Sci. 68:609-618.
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Schindler, DE, PR Leavitt, SP Johnson, CS Brock. 2006. A 500-year context fro the recent surge in sockeye salmon (Oncorhynchus nerka) abundance in the Alagnak River, Alaska. Can. J. Fish. Aquat. Sci. 63:1439-1444.
Sergeant, CJ, DA Beauchamp. 2006. Effects of physical habitat and ontogeny on lentic habitat preferences of juvenile chinook salmon. Trans. Am. Fish. Soc. 135:1191–1204.
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Skalski, JR, JJ Millspaugh, KE Ryding. 2006. The impact of hunter postseason questionnaire design on big game harvest estimation. Wildl. Soc. Bull. 34:329-337.
Skalski, JR, JJ Millspaugh, RD Spencer. 2006. Population estimation and biases in paint-ball mark-resighting surveys of elk. J. Wildl. Mgmt. 69(3):1043-1052.
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Stabeno, PJ, GL Hunt, Jr, JM Napp, JD Schumacher. 2006. Interdisciplinary ocean science of the Bering Sea continental shelf. The Sea (13-14):1177-1212.
Staudigel, H, TW Pietsch, 17 additional co-authors. 2006. Vailulu’u Seamount, Samoa: Life and Death on an Active Submarine Volcano. Proc. Nat. Acad. Sci., 103(17):6448-6453.
Thompson, AR, CE Thacker, EY Shaw, DM Roje. 2006. Characterization of 16 microsatellite loci for a common coral reef fish, the fierce shrimpgoby Ctenogobiops feroculus. Mol. Ecol. Notes 6(3):918–920. doi:10.1111/j.1471-8286.2006.01399.x.
Townsend, RL, JR Skalski, P Dillingham, TW Steig. 2006. Correcting bias in survival estimation resulting from tag failure in acoustic and radiotelemetry studies. J. Agric. Biol. Environ. Stat. 11:183-196.
Trites, AW, AJ Miller, HDG Maschner, MA Alexander, SJ Bograd, JA Calder, A Capotondi, KO Coyle, E Di Lorenzo, BP Finney, EJ Gregr, CE Grosch, SR Hare, GL Hunt, Jr, J Jahncke, NB Kachel, H-J Kim, C Ladd, NJ Mantua, C Marzban, W Maslowski, R Mendelssohn, DJ Neilson, SR Okkonen, JE Overland, KL Reedy-Maschner, TC Royer, FB Schwing, JXL Wang, AJ Winship. 2006. Bottom-up forcing and the decline of Steller sea lions in Alaska: assessing the ocean climate hypothesis. Fish. Oceanogr. 16:46-67.
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2007
Aires-da-Silva, AM, VF Gallucci. 2007. Demographic and risk analyses applied to management and conservation of the blue shark (Prionace glauca) in the North Atlantic Ocean. Mar. Freshwat. Res. 58:570-580.
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Cordell, JR, M Rasmussen, SM Bollens. 2007. Biology of the introduced copeped Pseudodiaptomus inopinus in a northeast Pacific estuary. Mar. Ecol. Prog. Ser. 333:213-227.
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Francis, TB, DE Schindler, JM Fox, E Seminet-Reneau. 2007. Effects of urbanization on the dynamics of organic sediments in temperate lakes. Ecosystems 10:1057-1068.
Garcia de Leaniz, C, IA Fleming, S Einum, E Verspoor, WC Jordon, S Consuegra, N Aubin-Horth, D Lajus, BH Letcher, AF Youngson, JH Webb, LA Vøllestad, B Villanueva, A Ferguon, TP Quinn. 2007. A critical review of adaptive genetic variation in Atlantic salmon: implications for conservation. Biol. Rev. 82:173-211. doi:10.1111/j.1469-185X.2006.00004.x.
Garrett, DL, TW Pietsch, FM Utter, L Hauser. 2007. The hybrid sole, Inopsetta ischyra (Teleostei: Pleuronectiformes: Pleuronectidae): hybrid or biological species? Trans. Amer. Fish. Soc. 136(2):460-468.
Gerlotto F, S Bertrand, N Bez, M Gutiérrez. 2006. Waves of agitation inside anchovy schools: a way to transmit information and facilitate fast morphological and structural changes in response to predation, as observed with multibeam sonar. ICES J. Mar. Sci. 63:1405-1417.
Goodwin, RA, JM Nestler, JJ Anderson, LJ Weber. 2007. A new tool to forecast fish movement and passage. Hydro Review 26(4):58-71.
Gilbert, BA, KJ Raedeke, JR Skalski, AB Stringer. 2007. Modeling black-tailed deer population dynamics using structured and unstructured approaches. J. Wildl. Mgmt. 71(1):144-154.
Grafton, RQ, T Kompas, RW Hilborn. 2007. Economics of overexploitation revisited. Science 318:1601.
Grant, JB, JD Olden, JJ Lawler, CR Nelson, BR Silliman. 2007. Academic institutions in the United States and Canada ranked according to research productivity in the field of conservation biology. Cons. Biol. 21:1139-1144.
Gutiérrez, M, G Swartzman, A Bertrand, S Bertrand. 2007. Anchovy and sardine spatial dynamics and aggregation patterns in the Humboldt Current ecosystem, Peru, from 1983-2003. Fish. Oceanog. 16(2):155-168.
Halpern, BS, BR Silliman, JD Olden, JP Bruno, MD Bertness. 2007. Incorporating positive interactions in aquatic restoration and conservation. Front. Ecol. Environ. 5:153-160.
Hauser, DD, MG Logsdon, EE Holmes, GR VanBlaricom, RW Osborne. 2007. Summer distribution patterns of southern resident killer whales Orcinus orca: core areas and spatial segregation of social groups. Mar. Ecol. Prog. Ser. 351:301-310. doi:10.3354/meps07117.
Henderson, MJ, JK Horne. 2007. Comparison of in situ, ex situ, and backscatter model estimates of Pacific hake (Merluccius productus) target strength. Can. J. Fish. Aquat. Sci. 64:1781-1794. doi:10.1139/F07-134.
Hilborn, R. 2007. Biodiversity loss in the oceans: how bad is it? Science 316:1281-1282.
Hilborn, R. 2007. Defining success in fisheries and conflicts in objectives. Mar. Pol. 31:153-158.
Hilborn, R. 2007. Faith, evolution, and the burden of proof—the author responds. Fisheries 32:91-93.
Hilborn, R. 2007. Managing fisheries is managing people: what has been learned? Fish and Fisheries 8:285–296.
Hilborn, R. 2007. Moving to sustainability by learning from successful fisheries. Ambio 36(4):296-303.
Hilborn, R. 2007. Reinterpreting the state of fisheries and their management. Ecosystems. doi:10.1007/s10021-007-9100-5.
Hilborn, R, G Hopcraft, P Arcese. 2007. Wildlife population increases in Serengeti National Park—response. Science 315:1790-1791.
Hill, SL, GM Watters, AE Punt, MK McAllister, CL Quéré, J Turner. 2007. Model uncertainty in the ecosystem approach to fisheries. Fish and Fisheries 8:315-336.
Hodgins-Davis, A, S Roberts, DF Cowan, J Atema, M Bennie, C Avolio, J Defaveri, G Gerlach. 2007. Characterization of SSRs from the American lobster, Homarus americanus. Mol. Ecol. Notes 7(2):330-332(3).
Horner-Devine, MC, J Silver, BJM Bohannan, RK Colwell, JA Fuhrman, JL Green, CR Kuske, JBH Martiny, G Muyzer, S Naeem, L Øvreås, A-L Reysenbach, VH Smith. 2007. A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology 88(6):1345-1353.
Howe, ER, CA Simenstad. 2007. Restoration trajectories and food web linkages in San Francisco Bay’s estuarine marshes: a manipulative translocation experiment. Mar. Ecol. Prog. Ser. 351:65-76. doi:10.3354/meps07120.
Hyrenbach, KD, RR Veit, H Weimerskirch, N Metzl, GL Hunt, Jr. 2007. Community structure across a large-scale ocean productivity gradient: Marine bird assemblages of the Southern Indian. Deep Sea Res. I 54:1129-1145.
Hyun, S-Y, KW Myers, A Talbot. 2007. Year-to-year variability in ocean recovery rate of Columbia River upriver bright fall chinook salmon (Oncorhynchus tshawytscha). Fish. Oceanogr. 16(4):350-362.
Jacobs, SM, JS Bechtold, HC Biggs, ME McClain, RJ Naiman, SS Perakis, G Pinay, MC Scholes, NB Grimm, S Lorentz. 2007. Nutrient vectors and riparian processing: A review with special reference to African semiarid savanna ecosystems. Ecosystems doi:10.1007/s10021-007-9092-1.
Jacobs, SM, NE Pettit, RJ Naiman. 2007. Nitrogen fixing habit of the savanna tree Philenoptera violacea (Klotzsch) Schrire (Apple leaf) of different ages on a semi-arid riparian landscape. S. Afr. J. Bot. 73:163-167.
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Kenaley, CP. 2007. Revision of the stoplight loosejaw genus Malacosteus (Teleostei: Stomiidae: Malacosteinae), with description of a new species from the temperate southern hemisphere and Indian Ocean. Copeia 4:886-890.
Kennard, MJ, JD Olden, AH Arthington, BJ Pusey, NL Poff. 2007. Multi-scale effects of flow regime and habitat and their interaction on fish assemblage structure in eastern Australia. Can. J. Fish. Aquat. Sci. 64:1346-1359.
Kharin, VE, TW Pietsch. 2007. New finding of a rare deep-sea ceratioid anglerfish, Dermatias platynogaster Smith and Radcliffe (Lophiiformes: Oneirodidae). J. Ichthy. 47(9):806–808.
Laska, SB, WJ Mitsch, K Orth, H Mashriqui, DJ Reed, L Shabman, CA Simenstad, BJ Streever, RR Twilley, CC Watson, JT Wells, DF Whigham. 2007. Restoration of the Mississippi Delta: Lessons from Hurricanes Katrina and Rita. Science 315:1679-1684.
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Little, LR, AE Punt, BD Mapstone, F Pantus, ADM Smith, CR Davies, AD McDonald. 2007. ELFSim—A model for evaluating management options for spatially structured reef fish populations: an illustration of the “larval subsidy” effect. Ecol. Model. 205:381-396.
Lokman, PM, KAN George, SL Divers, M Algie, G Young. 2007. 11-ketotestosterone and IGF-I increase the size of previtellogenic oocytes from shortfinned eel, Anguilla australis, in vitro. Reproduction 133:955-967. doi:10.1530/REP-06-0229. Available online: http://www.reproduction-online.org/.
Lyons, MM, Y-T Lau, WE Carden, JE Ward, SB Roberts, R Smolowitz, J Vallino, B Allam. 2007. Characteristics of marine aggregates in shallow-water ecosystems: Implications for disease ecology. EcoHealth 4:406–420.
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2008
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Hauser, DDW, CS Allen, HB Rich, Jr, TP Quinn. 2008. Resident harbor seals (Phoca vitulina) in Iliamna Lake, Alaska: Summer diet and partial consumption of adult sockeye salmon (Oncorhynchus nerka). Aquat. Mamm. 34(3):303-309. DOI 10.1578/AM.34.3.2008.303.
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Horner-Devine, MC, JM Silver, MA Leibold, BJM Bohannan, RK Colwell, JA Fuhrman, JL Green, CR Kuske, JBH Martiny, G Muyzer, L Øvreas, A-L Reysenbach, VH Smith. 2008. A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology 88(6):1345-1353.
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Martell, SJD, CJ Walters, R Hilborn. 2008. Retrospective analysis of harvest management performance for Bristol Bay and Fraser River sockeye salmon (Oncorhynchus nerka). Can. J. Fish. Aquat. Sci. 65:409-424.
McGilliard, CR, R Hilborn. 2008. Modeling no-take marine reserves in regulated fisheries: assessing the role of larval dispersal. Can. J. Fish. Aquat. Sci. 65:2509-2523.
McIntyre, JK, DH Baldwin, JP Meador, NL Scholz. 2008. Influence of water hardness, alkalinity, pH, and DOC on the olfactory neurotoxicity of copper to juvenile salmon. Environ. Sci. Technol. 42:1352-1358.
McLean, JE, TR Seamons, MB Dauer, P Bentzen, TP Quinn. 2008. Variation in reproductive success and effective number of breeders in a hatchery population of steelhead trout (Oncorhynchus mykiss): examination by microsatellite-based parentage analysis. Conserv. Genet. 9:295-304.
Mills, A, T Francis, V Shandas, K Whittaker, J Graybill. 2008. Using best available science to protect critical areas in Washington state: challenges and barriers to planners. Urb. Ecosyst. 10.1007/s11252-008-0071-x.
Mitchell, D, P McAllister, K Stick, L Hauser. 2008. Sperm contamination in archived and contemporary herring samples. Mol. Ecol. Resourc. 8:50-55.
Monroe, JB, JD Olden. 2008. Aqua-rock climbers. Nat. Hist. May 2008:64.
Moore, JW, DE Schindler. 2008. Biotic disturbance and benthic community dynamics in salmon-bearing streams. Journal of Animal Ecology Online. doi:10.1111/j.1365-2656.2007.01336.
Moore, JW, DE Schindler, CP Ruff. 2008. Habitat saturation drives thresholds in stream subsidies. Ecology 89(2):306-312.
Moore, SK, NJ Mantua, BM Hickey, VL Trainer. 2008. Recent trends in paralytic shellfish toxins in Puget Sound, relationships to climate, and capacity for prediction of toxic events. Harmful Algae. doi:10.1016/j.hal.2008.10.003.
Moore, SK, NJ Mantua, JP Kellogg, JA Newton. 2008. Local and large-scale climate forcing of Puget Sound oceanographic properties on seasonal to interdecadal timescales. Limnol. Oceanogr. 53(5):1746-1758.
Moore, JW, BX Semmens. 2008. Incorporating uncertainty and prior information into stable isotope mixing models. Ecol. Lett. 11. doi:10.1111/j.1461-0248.2008.01163.x.
de Mutsert, K, JH Cowan, Jr, TE Essington, R Hilborn. 2008. Reanalyses of Gulf of Mexico fisheries data: Landings can be misleading in assessments of fisheries and fisheries ecosystems. PNAS 105(7):2740-2744.
Naiman, RJ, JJ Latterell, NE Pettit, JD Olden. 2008. Flow variability and the vitality of river systems. C.R. Geo. 340:629-643.
Naish, K, JJ Hard. 2008. Bridging the gap between the genotype and the phenotype: linking genetic variation, selection and adaptation in fishes. Fish and Fisheries 9:396-422.
Narum, SR, M Banks, TD Beacham, MR Belllinger, MR Campbell, J DeKoning, A Elz, CM Guthrie, C Kozfkay, KM Miller, P Moran, R Phillips, LW Seeb, CT Smith, K Warheit, SF Young, JC Garza. 2008. Differentiating salmon populations at broad and fine geographical scales with microsatellites and single nucleotide polymorphisms. Molec. Ecol. 17:3464-3477.
Nestler, JM, RA Goodwin, DL Smith, JJ Anderson, S Li. 2008. Optimum fish passage and guidance designs are based in the hydrogeomorphology of natural rivers. Riv. Res. Applic. 24:148-168. doi:10.1002/rra.1056.
Olden, JD, MJ Kennard, BJ Pusey. 2008. Species invasions and the changing biogeography of Australian freshwater fishes. Glob. Ecol. Biogeo. 17:25-37.
Olden, JD, JJ Lawler, NL Poff. 2008. Machine learning methods without tears: a primer for ecologists. Quart. Rev. Biol. 83:171-193.
Olden, JD, NL Poff, KR Bestgen. 2008. Trait synergisms and the rarity, extirpation, and extinction risk of desert fishes. Ecology 89:847-856.
Punt, AE. 2008. A note on the modelling of MSY-related parameters when population dynamics are stochastic. J. Cetac. Res. Mgmt. 10(3):183-189.
Punt, AE, MW Dorn, MA Haltuch. 2008. Evaluation of threshold management strategies for groundfish off the U.S.West Coast. Fish. Res. 94:251-266.
Punt, AE, DC Smith, K KrusicGolub, S Robertson. 2008. Quantifying age-reading error for use in fisheries stock assessments, with application to species in Australia’s southern and eastern scalefish and shark fishery. Can. J. Fish. Aquat. Sci. 65:1991-2005.
Rahel, FJ, JD Olden. 2008. Assessing the effects of climate change on aquatic invasive species. Conservation Biology 22:521-533.
Renner, M, K Bell. 2008. A white killer whale in the Central Aleutians. Arctic 61(1):102-104.
Renner, M, GL Hunt, Jr, JF Piatt, GV Byrd. 2008. Seasonal and distributional patterns of seabirds along the Aleutian Archipelago. Mar. Ecol. Prog. Ser. 357:301-311.
Reum, JCP, CE Paulsen, TW Pietsch, S Stetter. 2008. First record of an albino chimaeriform fish, Hydrolagus colliei. Northw. Natur. 89(1):60-62.
Roberts, SB, Y Gueguen, J de Lorgeril, F Goetz. 2008. Rapid accumulation of an interleukin 17 homolog transcript in Crassostrea gigas hemocytes following bacterial exposure. Develop. Compar. Immunol. 32:1099-1104.
Rogers, LA, DE Schindler. 2008. Asynchrony in population dynamics of sockeye salmon in southwest Alaska. Oikos 117:1578-1586.
Rothaus, DP, B Vadopalas, CS Friedman. 2008. Precipitous declines in pinto abalone (Haliotis kamtschatkana kamtschatkana) abundance in the San Juan Archipelago, Washington, USA, despite statewide fishery closure. Can. J. Fish. Aquat. Sci. 65:2703-2711. doi:10.1139/F08-168.
Santagata, S, ZR Gasiñaite, E Verling, JR Cordell, K Eason, JS Cohen, K Bacela, G Quilez-Badia, TH Johengen, DF Reid, GM Ruiz. 2008. Effect of osmotic shock as a management strategy to reduce transfers of nonindigenous species among low-salinity ports by ships. Aquat. Invas. 3(1):61-76. doi:10.3391/ai.2008.3.1.10.
Schindler, DE, X Augerat, E Fleishman, NJ Mantua, B Riddell, M Ruckelshaus, J Seeb, M Webster. 2008. Climate change, ecosystem impacts, and management for Pacific salmon. Fisheries 33:502-506.
Sethi, SA, R Hilborn. 2008. Interactions between poaching and management policy affect marine reserves as conservation tools. Biol. Cons. 141:506-516.
Shaw, FR, DR Gunderson. 2008. Notes on the life history traits of the rosethorn rockfish, Sebastes helvomaculatus. Cal. Fish Game 94(3):123-136.
Sinclair, EH, LS Vlietstra, DS Johnson, TK Zeppelin, GV Byrd, AM Springer, RR Ream, GL Hunt, Jr. 2008. Patterns in prey use among fur seals and seabirds in the Pribilof Islands. Deep-Sea Res. II 55:1897-1918.
Skalski, JR, JJ Millspaugh, KE Ryding. 2008. Effects of asymptotic and maximum age estimates on calculated rates of population change. Ecol. Model. 212:528-535. doi:10.1016/j.ecolmodel.2007.11.012.
Skalski, JR, RL Townsend, LL McDonald, JW Kern, JJ Millspaugh. 2008. Type I errors linked to faulty statistical analyses of endangered subspecies classifications. J. Agric., Biol., Environ. Stat. 13(2):199-220.
Skov, H, T Gunnlaugsson, WP Budgell, JK Horne, L Nøttestad, E Olsen, H Søiland, G Víkingsson, G Waring. 2008. Small-scale spatial variability of sperm and sei whales in relation to oceanographic and topographic features along the Mid-Atlantic Ridge. Deep Sea Res. II 55:254-268.
Smith, ADM, DC Smith, GN Tuck, N Klaer, AE Punt, I Knuckey, J Prince, A Morison, R Kloser, M Haddon, Sally Wayte, Jemery Day, G Fay, F Pribac, M Fuller, B Taylor, LR Little. 2008. Experience in implementing harvest strategies in Australia’s south-eastern fisheries. Fish. Res. 94:373-379.
Smith, CT, LW Seeb. 2008. Number of alleles as a predictor of the relative assignment accuracy of short tandem repeat (STR) and single-nucleotide-polymorphism (SNP) baselines for chum Salmon. Trans. Am. Fish. Soc. 137:751-762.
Su, N-J, C-L Sun, AE Punt, S-Z Yeh. 2008. Environmental and spatial effects on the distribution of blue marlin (Makaira mazara) as inferred from data for longline fisheries in the Pacific Ocean. Fish. Oceanog. 17:432-445.
Su, N-J, S-Z Yeh, C-L Sun, AE Punt, Y Chen, S-P Wang. 2008. Standardizing catch and effort data of the Taiwanese distant-water longline fishery in the western and central Pacific Ocean for bigeye tuna, Thunnus obesus. Fish. Res. 90:235-246.
Sutton, TT, FM Porteiro, M Heino, I Byrkjedal, G Langhelle, CIH Anderson, JK Horne, H Søiland, T Falkenhaug, OR Godø, OA Bergstad. 2008. Vertical structure, biomass and topographic association of deep-pelagic fishes in relation to a mid-ocean ridge system. Deep Sea Res. II 55:161-184.
Takahashi, A, K Matsumoto, GL Hunt, J., MT Shultz, AS Kitaysky, K Sato, K Iida, Y Watanuki. 2008. Thick-billed murres use different diving behaviors in mixed and stratified waters. Deep-Sea Res. II 55:1837-1845.
Taylor, EB, E Lowery, A Lilliestrale, A Elz, TP Quinn. 2008. Genetic analysis of sympatric char populations in western Alaska: Arctic char (Salvelinus alpinus) and Dolly Varden (Salvelinus malma) are not two sides of the same coin. J. Evol. Biol. 21:1609-1625.
Terés, S, G Barceló-Coblijn, M Benet, R Álvarez, R Bressani, JE Halver, PV Escribá. 2008. Oleic acid content is responsible for the reduction in blood pressure induced by olive oil. PNAS 105(37):13811-13816.
Thacker, CE, AR Thompson, DM Roje, EY Shaw. 2008. New expansions in old clades: population genetics and phylogeny of Gnatholepis species (Teleostei: Gobioidei) in the Pacific. Mar. Biol. 153(3):375-385. doi:10.1007/s00227-007-0814-x.
Tipsmark CK, JA Luckenbach, SS Madsen, P Kiilerich, RJ Borski. 2008. Osmoregulation and expression of ion transport proteins and putative claudins in the gill of southern flounder (Paralichthys lethostigma). Comp. Biochem. Physiol. 150A:265-273.
Valero, JL, M Lasta. 2008. Estimating survival of discarded scallops in the Patagonian scallop fishery: Comment on "Survival of Patagonian scallop (Zygochlamys patagonica, King and Broderip, 1832) after the size selection process on commercial fishing vessels", by Bremec et al. 2004. Fish. Res. 90:313-315.
Valero, JL, B Lee, D Armstrong, L Orensanz, A Parma, R Hilborn, B Sizemore, T Palzer. 2008. Population dynamics and historic trends of geoduck clams under episodic low dissolve oxygen conditions in Hood Canal. J. Shellf. Res. 27:462-463.
Vander Zanden, MJ, JD Olden. 2008. A management framework for preventing the secondary spread of aquatic invasive species. Can. J. Fish. Aquat. Sci. 65:1512-1522.
Walters, CJ, R Hilborn, V Christensen. 2008. Surplus production dynamics in declining and recovering fish populations. Can. J. Fish. Aquat. Sci. 65:2536-2551.
Waples, RS, WW Dickhoff, L Hauser, N Ryman. 2008. Six decades of fishery genetics: Taking stock. Fisheries 33:76-79.
Waples, RS, AE Punt, JM Cope. 2008. Integrating genetic data into management of marine resources: how can we do it better? Fish and Fisheries 9:423-449.
Watson, JT, TE Essington, CE Lennert-Cody, MA Hall. 2008. Trade-Offs in the design of fishery closures: management of silky shark bycatch in the Eastern Pacific Ocean tuna fishery. Cons. Biol. doi:10.1111/j.1523-1739.2008.01121.x.
Weitkamp, LA, MV Sturdevant. 2008. Food habits and marine survival of juvenile Chinook and coho salmon from marine waters of Southeast Alaska. Fish. Oceanogr. 17:5, 380–395.
Weller, DW, A L Bradford, H Kato, T Bando, S Ohtani, A M Burdin, RL Brownell, Jr. 2008. Photographic match of a western gray whale between Sakhalin Island, Russia and Honshu, Japan: First link between feeding ground and migratory corridor. J. Cet. Res. Mgmt. 10:89-91.
Westley, PAH, SM Carlson, TP Quinn. 2008. Among-population variation in adipose fin size parallels the expression of other secondary sexual characteristics in sockeye salmon (Oncorhynchus nerka). Environ. Biol. Fish 81:439-446. doi:10.1007/s10641-007-9236-3.
Westley, PAH, R Hilborn, TP Quinn, GT Ruggerone, DE Schindler. 2008. Long-term changes in rearing habitat and downstream movement by juvenile sockeye salmon (Oncorhynchus nerka) in an interconnected Alaska lake system. Ecol. Freshwat. Fish. 17:443–454.
Wiese, FK, JK Parrish, CW Thomspon, C Maranto. 2008. Ecosytem-based management of predator-prey relationships: Piscivorous birds and salmonids in the mid-Columbia River. Ecol. Appl. 18(3):681-700. doi:10.1890/06-1825.1.
Yoon, M, S Sato, JE Seeb, V Brykov, LW Seeb, V Varnavskaya, RL Wilmot, DH Jin, S Urawa, A Urano, and S Abe. 2008. Mitochondrial DNA variation and genetic population structure of chum salmon Oncorhynchus keta around the Pacific Rim. J. Fish Biol. 73(5):1256-1266.
Zabel, RW, J Faulkner, SG Smith, JJ Anderson, C Van Holmes, N Beer, S Iltis, J Krinke, G Fredricks, B Bellerud, J Sweet, A Giorgi. 2008. Comprehensive passage (COMPASS) model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia 609:289–300.
Zador, SG, AE Punt, JK Parrish. 2008. Population impacts of endangered short-tailed albatross bycatch in the Alaskan trawl fishery. Biol. Cons. 141:872-882.
Zador, SG, JK Parrish, AE Punt, JL Burke, SM Fitzgerald. 2008. Determining spatial and temporal overlap of an endangered seabird with a large commercial trawl fishery. End. Spec. Res. 5:103-115. doi:10.3354/esr00152.
Zuccarelli, MD, M Kusakabe, I Nakamura, EF Prentice, G Young, RL Ingermann. 2008. Acute stress response of Kootenai River white sturgeon Acipenser transmontanus Richardson reflected in peritoneal fluid and blood plasma. J. Fish Biol. 72:1831-1840. doi:10.1111/j.1095-8649.2008.01840.x. Available online at http://www.blackwell-synergy.com.
2009
Adams, NG, VL Trainer, G Rocap, RP Herwig, L Hauser. 2009. Genetic population structure of Pseudo-nitzschia pungens (Bacillariophyceae) from the Pacific Northwest and the North Sea. J. Phycol. 45:1037-1045.
A’mar, ZT, AE Punt, MW Dorn. 2009. The evaluation of two management strategies for the Gulf of Alaska walleye pollock fishery under climate change. ICES J. Mar. Sci. 66: 1614-1632. doi:10.1093/icesjms/fsp044.
A'mar, ZT, AE Punt, MW Dorn. 2009. The impact of regime shifts on the performance of management strategies for the Gulf of Alaska walleye pollock (Theragra chalcogramma) fishery. Can. J. Fish. Aquat. Sci. 66:2222-2242. doi:10.1139/F09-142.
Anderson, JJ, WN Beer. 2009. Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecol. Applic. 19(8):1989–2003.
Baker, MR, DE Schindler. 2009. Unaccounted mortality in salmon fisheries: non-retention in gillnets and effects on estimates of spawners. J. Appl. Ecol. 46:752-761.
Baker, MR, DE Schindler, GW Holtgrieve, VL St. Louis. 2009. Bioaccumulation and transport of contaminants: migrating sockeye salmon as vectors of mercury. Environ. Sci. Tech. 43:8840-8846.
Banish, NP, BJ Adams, RS Shively, MM Mazur, DA Beauchamp, TM Wood. 2009. Distribution and habitat associations of radio-tagged adult lost river and shortnose suckers in Upper Klamath Lake, Oregon. Trans. Am. Fish. Soc. 138:153-168.
Beaudreau, AH, TE Essington. 2009. Development of a new field-based approach for estimating consumption rates of fishes and comparison with a bioenergetics model for lingcod (Ophiodon elongatus). Can. J. Fish. Aquat. Sci. 66(4):565-578.
Bradford, AL, DW Weller, YV Ivashchenko, AM Burdin, RL Brownell, Jr. 2009. Anthropogenic scarring of western gray whales (Eschrichtius robustus). Mar. Mamm. Sci. 25(1):161-175.
Branch, TA. 2009. Differences in predicted catch composition between two widely used catch equation formulations. Can. J. Fish. Aquat. Sci. 66:126-132.
Branch, TA. 2009. How do individual transferable quotas affect marine ecosystems? Fish and Fisheries 10:39-57.
Branch, TA, YA Mikhalev, H Kato. 2009. Separating pygmy and Antarctic blue whales using long-forgotten ovarian data. Mar. Mamm. Sci. 25:833-854. doi:10.1111/j.1748-7692.2009.00292.x.
Brown, RS, TJ Carlson, AE Welch, JR Stephenson, CS Abernethy, BD Ebberts, MJ Langeslay, ML Ahmann, DH Feil, JR Skalski, RL Townsend. 2009. Assessment of barotrauma from rapid decompression of depth-acclimated juvenile chinook salmon bearing radiotelemetry transmitters. Trans. Am. Fish. Soc. 138:1285-1301.
Bugaev, AV, KW Myers. 2009. Stock-specific distribution and abundance of immature sockeye salmon in the western Bering Sea in summer and fall 2002–2004. N. Pac. Anadr. Fish Comm. Bull. 5:71–86.
Bugaev, AV, KW Myers. 2009. Stock-specific distribution and abundance of immature Chinook salmon in the western Bering Sea in summer and fall 2002–2004. N. Pac. Anadr. Fish Comm. Bull. 5:87–97.
Bugaev, AV, EA Zavolokina, LO Zavarina, AO Shubin, SF Zolotukhin, NF Kaplanova, MV Volobuev, IN Kireev, KW Myers. 2009. Stock-specific distribution and abundance of immature chum salmon in the western Bering Sea in summer and fall 2002–2003. N. Pac. Anadr. Fish Comm. Bull. 5:105–120.
Buser TJ, ND Davis, I Jimenez-Hidalgo, L Hauser. 2009. Genetic techniques provide evidence of Chinook salmon feeding on walleye pollock offal. Bull. N. Pac. Anad. Fish Comm. 5:225-229.
Carlson, SM, HB Rich, Jr, TP Quinn. 2009. Does variation in selection imposed by bears drive divergence among populations in the size and shape of sockeye salmon? Evolution 63-5:1244-1261. doi:10.1111/j.1558-5646.2009.00643.x.
Carnevale, G, TW Pietsch. 2009. An Eocene frogfish (Lophiiformes: Antennariidae) from Monte Bolca, Italy: the earliest known skeletal record for the family. Palaeontology 2009:1-8.
Carnevale, G, TW Pietsch. 2009. The deep-sea anglerfish genus Acentrophryne (Teleostei, Ceratioidei, Linophrynidae) in the Miocene of California. J. Vert. Paleo. 29(2):129-138.
Cope, JM, AE Punt. 2009. Drawing the lines: resolving fishery management units with simple fisheries data. Can. J. Fish. Aquat. Sci. 66:1256-1273.
Cope, JM, AE Punt. 2009. Length-based reference points for data-limited situations: applications and restrictions. Mar. Coast. Fish. Dyn. Mgmt. Ecosys. Sci. 1:169-186. doi:10.1577/C08-025.1.
Cordell, JR, DJ Lawrence, NC Ferm, LM Tear, SS Smith,, RP Herwig. 2009. Factors influencing densities of non-indigenous species in the ballast water of ships arriving at ports in Puget Sound, Washington, United States. Aquat. Cons.: Mar. Freshw. Ecosyst. 19: 322–343.
Courtenay, WR, J., BB Collette, TE Essington, R Hilborn, JW Orr, D Pauly, JE Randall, WF Smith-Vaniz. 2009. Risks of introductions of marine fishes: reply to Briggs. Fisheries 34:181-186.
Cross, AD, DA Beauchamp, JH Moss, KW Myers. 2009. Interannual variability in early marine growth, size-selective mortality, and marine survival for Prince William Sound pink salmon. Marine and Coastal Fisheries: Dynamics, Management and Ecosystem Science 1:57-70.
Cunningham, KM, MF Canino, IB Spies, L Hauser. 2009. Genetic isolation by distance and localized fjord population structure in Pacific cod (Gadus macrocephalus): limited effective dispersal in the northweastern Pacific Ocean. Can. J. Fish. Aquat. Sci. 66:153-166.
Dauer, MB, TR Seamons, L Hauser, TP Quinn, KA Naish. 2009. Estimating the ratio of hatchery-produced to wild adult steelhead on the spawning grounds using scale pattern analyses. Trans. Am. Fish. Soc. 138:15-22.
Davis, ND, KW Myers, WJ Fournier. 2009. Winter food habits of Chinook salmon in the eastern Bering Sea. N. Pac. Anadr. Fish Comm. Bull. 5:243–253.
Davis, ND, AV Volkov, AYa Efimkin, NA Kuznetsova, JL Armstrong, O Sakai. 2009. Review of BASIS salmon food habits studies. N. Pac. Anadr. Fish Comm. Bull. 5:197–208.
Defaveri, J, R Smolowitz, S Roberts. 2009. Development and validation of a real-time quantitative PCR assay for the detection and quantification of Perkinsus marinus in the Eastern oyster, Crassostrea virginica. J. Shellf. Res. 28(3):459-464.
Dietrich, KS, EF Melvin, L Conquest. 2009. Integrated weight longlines with paired streamer lines—Best practice to prevent seabird bycatch in demersal longline fisheries. Biol. Cons. 141:1793-1805.
Dietrich, KS, JK Parrish, EF Melvin. 2009. Understanding and addressing seabird bycatch in Alaska demersal longline fisheries. Biol. Cons. 142(11):2642-2656. doi:10.1016/j.biocon.2009.06.013.
Doctor, KK, TP Quinn. 2009. Potential for adaptation-by-time in sockeye salmon (Oncorhynchus nerka): the interactions of body size and in-stream reproductive life span with date of arrival and breeding location. Can. J. Zool. 87:708-717.
Doctor, KK, R Hilborn, M Rowse, T Quinn. 2009. Spatial temporal patterns of upriver migration by sockeye salmon populations in the Wood River System, Bristol Bay, Alaska. Trans. Am. Fish. Soc. 139:80-91.
Drinkwater, KF, F Mueter, KD Friedland, M Taylor, GL Hunt, Jr, J Hare, W Melle. 2009. Recent climate forcing and physical oceanographic changes in Northern Hemisphere regions: A review and comparison of four marine ecosystems. Prog. Oceanogr. 81:10-28.
Essington, TE. 2009. Ecological indicators display reduced variation in North American catch share fisheries. PNAS Early Edition. DOS: 10.1073/pnas.0907252107.
Fierer, N, KM Carney, MC Horner-Devine, JP Megonical. 2009. The biogeography of ammonia-oxidizing bacterial communities in soil. Microb. Ecol. 58:435-44.
Fore, LS, JR Karr, WS Fisher, P Bradley, WS Davis. 2009. Heeding a call to action for US coral reefs: The untapped potential of the Clean Water Act. Mar. Poll. Bull. 58:1421-1423.
Fox, HE, P Kareiva, B Silliman, J Hitt, DA Lytle, BS Halpern, CV Hawkes, J Lawler, M Neel, JD Olden, MA Schlaepfer, K Smith, H Tallis. 2009. Why do we fly? Ecologists' sins of emission. Front. Ecol. Environ. 7:294-296.
Francis, TB, DE Schindler. 2009. Shoreline urbanization reduces terrestrial insect subsidies to fishes in North American lakes. Oikos 118:1872-1882. doi:10.1111/j.1600-0706.2009.17723.x.
Fukuwaka, M, ND Davis, T Azumaya, T Nagasawa. 2009. Bias-corrected size trends in chum salmon in the central Bering Sea and North Pacific Ocean. N. Pac. Anadr. Fish Comm. Bull. 5:173–176.
Gomez-Ichida, D, TW Knight, DE Ruzzante. 2009. Interaction of landscape and life history attributes on genetic diversity, neutral divergence and gene flow in a pristine community of salmonids. Molec. Ecol. 18:4854-4869. doi:10.1111/j.1365-294X.2009.04409.x.
Gurarie, E, JJ Anderson, RW Zabel. 2009. Continuous models of population-level heterogeneity inform analysis of animal dispersal and migration. Ecology 90:8, 2233-2242.
Johnson, SP, DE Schindler. 2009. Trophic ecology of Pacific salmon (Oncorhynchus spp.) in the ocean: a synthesis of stable isotope research. 2009. Ecol. Res. 24:855-863.
Jurado-Molina J, J Palleiro-Nayar, NL Gutiérrez. 2009. Developing a Bayesian framework for stock assessment and decision analysis of the red sea urchin fishery in Baja California, Mexico. Ciencias Marinas 35(2):183–193.
Hall, JE, J Chamberlin, AN Kagley, C Greene, KL Fresh. 2009. Effects of gastric and surgical insertions of dummy ultrasonic transmitters on juvenile chinook salmon in seawater. Trans. Am. Fish. Soc. 138:52-57.
Haltuch, MA, AE Punt, MW Dorn. 2009. Evaluating the estimation of fishery management reference points in a variable environment. Fish. Res. 100:42-56.
Hamel, NJ, AE Burger, K Charleton, P Davidson, S Lee, DF Bertram, JK Parrish. 2009. Assessing mortality impacts in coastal net fisheries using marine bird strandings. Mar. Ornithol. 37(1):41-60.
Hamel NJ, JK Parrish, J Laake. 2008. Linking colonies to fisheries: Spatio-temporal overlap between common murres (Uria aalge) from Tatoosh Island and coastal gillnet fisheries in the Pacific Northwest, USA. Biol. Cons. 141:3101-3115.
Hayes, NM, KJ Butkas, JD Olden, MJ Vander Zanden. 2009. Behavioural and growth differences between experienced and naïve populations of a native crayfish in the presence of invasive rusty crayfish. Freshwat. Biol. 54:1876-1887.
Hilborn, R. 2009. Pretty Good Yield and exploited fishes. Mar. Pol. doi:10.1016/ j.marpol.2009.04.013.
Hilborn, R, E Litsinger. 2009. Cause of decline and potential for recovery of Atlantic cod populations. The Open Fish Science Journal 2:32-38.
Hobday, D, AE Punt. 2009. How much spatial structure can data for rock lobster off Victoria, Australia support? N. Zeal. J. Mar. Freshw. Res. 43:373-385.
Hobday, D, AE Punt. 2009. Management strategy evaluation for rock lobster, Jasus edwardsii, off Victoria, Australia: accounting for uncertainty in stock structure. N. Zeal. J. Mar. Freshw. Res. 43:485-509.
Hollowed, AB, NA Bond, TK Wilderbuer, WT Stockhausen, ZT A'mar, RJ Beamish, JE Overland, MJ Schirripa. 2009. A framework for modelling fish and shellfish responses to future climate change. ICES J. Mar. Sci. 66:1584-1594.
Holt, C, NJ Mantua. 2009. Defining spring transition: regional indices for the California Current. Mar. Ecol. Prog. Ser. 393:285–299. doi:10.3354/meps08147.
Holt, CA, AE Punt. 2009. Incorporating climate information into rebuilding plans for overfishe groundfish species of the U.S. west coast. Fish. Res. 100:57-67.
Holtgrieve, GW, DE Schindler, PK Jewett. 2009. Large predators and biogeochemical hotspots: Brown bear (Ursus arctos) predation on salmon alters nitrogen cycling in riparian soils. Ecol. Res. 24:1125-1135. DOI 10.1007/s11284-009-0591-8.
Honea, JM, JC Jorgensen, MM McClure, MM, TD Cooney, K Engie, D Holzer, R Hilborn, R. 2009 Evaluating habitat effects on population status: influence of habitat restoration on spring-run Chinook salmon. Freshwat. Biol. doi:10.1111/j.1365-2427.2009.02208.x.
Johnson, PTJ, JD Olden, CT Solomon, MJ Vander Zanden. 2009. Community and ecosystem effects of invasive predators and herbivores in an experimental aquatic system. Oecologia 159:161-170.
Karnovsky, NJ, KA Hobson, ZW Brown, GL Hunt, Jr. 2009. Distribution an diet of Ivory Gulls (Pagophyla eburnean) in the North Water Polynya. Arctic 65:65-74.
Karr, JR. 2009. Natural: a benchmark, not a bias. Northw. Sci. 83(3):294-297.
Kenaley, CP. 2009. Revision of Indo-Pacific species of the loosejaw dragonfish genus Photostomias (Teleostei: Stomiidae: Malacosteinae). Copeia 2009(1):175-189.
Kendall, NW, TP Quinn. 2009. Effects of population-specific variation in age and length on fishery selection and exploitation rates of sockeye salmon (Oncorhynchus nerka). Can. J. Fish. Aquat. Sci. 66:896–908.
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2010
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Kendall, NW, HB Rich, Jr, LR Jensen, TP Quinn. 2010. Climate effects on inter-annual variation in growth of the freshwater mussel, Anodonta beringiana, in Iliamna Lake, Alaska. Freshwat. Biol. 55:2339-2346.
Kenaley, CP. 2010. Comparative innervation of cephalic photophores of the loosejaw dragonfishes (Teleostei: Stomiiformes: Stomiidae): evidence for parallel evolution of long-wave bioluminescence. J. Morphol. 271:418-473.
Kocan, RM, JL Gregg, PK Hershberger. 2010. Release of infectious cells from epidermal ulcers in Ichthyophonus sp.–infected Pacific herring (Clupea pallasii): evidence for multiple mechanisms of transmission. J. Parasitol. 96(2):348-352.
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Larsen, ER. 2010. Faculty and graduate student in the Hutton Junior Fisheries Biology Program. Fisheries 35(7):350-351.
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Larson, ER, CA Busack, JD Anderson, JD Olden. 2010. Widespread distribution of the non-native northern crayfish (Orconectes virilis) in the Columbia River Basin. Northw. Sci. 84:108-111.
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Mallory, ML, NJ Karnovsky, AJ Gaston, KA Hobson, JF Provencher, MR Forbes, GL Hunt, Jr, T Byers, TA Dick. 2010. Temporal and spatial patterns in the diet of northern fulmars Fulmarus glacialis in the Canadian High Arctic. Aquat. Biol. 10:181-191.
Mantua, NJ, I Tohver, A Hamlet. 2010. Climate change impacts on streamflow extremes and summertime stream temperature and their possible consequences for freshwater salmon habitat in Washington State. Climatic Change. doi:10.1007/s10584-010-9845-2.
Maranto, CJ, TP Good, FK Wiese, JK Parrish. 2010. Impact of the Potholes Reservoir Caspian tern breedingcolony on out-migrating juvenile salmonids in the mid-Columbia River. Trans. Am. Fish. Soc. 139(2):362-381. doi:10.1577/T09-095.1.
Marr, SM, MP Marchetti, JD Olden, E García-Berthou, DL Morgan, I Arismendi, JA Day, CL Griffiths, PH Skelton. 2010. Freshwater fish introductions in Mediterranean-climate regions: are there commonalities in the conservation problem? Divers. Distr. 16:606-619.
Mathger, L, SB Roberts, R Hanlon. 2010. Evidence for distributed light sensing in the skin of cuttlefish, Sepia officinalis. Biol. Lett. online April 14, 2010. doi:10.1098/rsbl.2010.0223.
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McGilliard, CR, R Hilborn, A MacCall, AE Punt, JC Field. 2010. Can information from marine protected areas be used to inform control-rule-based management of small-scale, data-poor stocks? ICES J. Mar. Sci. 68(1):201-211. doi:10.1093/icesjms/fsq151.
McGlauflin, MT, MJ Smith, JT Wang, SF Young, N Chen, YC Lee, C Pacal, LW Seeb, J Stevens, JE Seeb. 2010. High-resolution melting analysis for the discovery of novel single-nucleotide polymorphisms in rainbow and cutthroat trout for species identification. Trans. Am. Fish. Soc. 139:676-684.
Metzger, KL, ARE Sinclair, R Hilborn, JGC Hopcraft, AR Mduma Simon. 2010. Evaluating the protection of wildlife in parks: the case of African buffalo in Serengeti. Biodivers. Cons. 19:3431-3444.
Miya, M, TW Pietsch, JW Orr, RJ Arnold, TP Satoh, AM Shedlock, H-C Ho, M Shimazaki, M Yabe, M Nishida. 2010. Evolutionary history of anglerfishes (Teleostei: Lophiiformes): A mitogenomic perspective. BMC Evol. Biol. 10(58):1-27.
Mims, MC, JD Olden, ZR Shattuck, NL Poff. 2010. Life history trait diversity of native freshwater fishes in North America. Ecol. Freshwat. Fish 19:390-400.
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Moore, JW, DE Schindler. 2010. Convergent phenologies of spawning salmon and emerging aquatic insects. Proc. Royal Soc. B-Biol. Sci. 277:1695-1703.
Moore, ME, FA Goetz, DM Van Doornik, EP Tezak, TP Quinn, JJ Reyes-Tomassini, BA Berejikian. 2010. Early marine migration patterns of wild coastal cutthroat trout (Oncorhynchus clarki clarki), steelhead trout (Oncorhynchus mykiss), and their hybrids. PLoS ONE 5(9):e12881.
Moore, SK, N Mantua, BM Hickey, VL Trainer. 2010. The relative influences of El Niño Southern Oscillation and Pacific Decadal Oscillation on paralytic shell fish toxin accumulation in Pacific Northwest shellfish. Limnol. Oceanogr. 55: 2262-2274. doi:10.4319/lo.2010.55.6.2262.
Naiman, RJ, D Dudgeon. 2010. Global alteration of freshwaters: Influences on human and environmental well-being. Ecol. Res. Online. doi:10.1007/s11284-010-0693-3.
Naiman, RJ, JS Bechtold, T Beechie, JJ Latterell, R Van Pelt. 2010. A process-based view of floodplain forest patterns in coastal river valleys of the Pacific Northwest. Ecosystems 13:1-31. doi:10.1007/s10021-009-9298-5.
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Neuman, MJ, Tissot, B, VanBlaricom, GR. 2010. Overall status and threats assessment of black abalone (Haliotis cracherodii Leach, 1814) populations in California, USA. J. Shellfish Res. 29:577-586. doi:10.2983/035.029.0305.
Olden, JD, MK Kennard, F Leprieur, PA Tedesco, KO Winemiller, E García-Berthou. 2010. Conservation biogeography of freshwater fishes: past progress and future directions. Divers. Distr. 16:496-513.
Olden, JD, RJ Naiman. 2010. Broadening the science of environmental flows: Managing riverine thermal regimes for ecosystem integrity. Freshwat. Biol. 55:86-107.
Olden, JD, RJ Naiman. 2010. Incorporating thermal regimes into environmental flows assessments: modifying dam operations to restore freshwater ecosystem integrity. Freshwat. Biol. 55:86-107.
O'Malley KG, McClelland EK, Naish KA. 2010. Clock genes localize to quantitative trait loci for stage-specific growth in juvenile coho salmon, Oncorhynchus kisutch. J. Hered. 101:628-632.
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Parsons, AL, JR Skalski. Quantitative assessment of salmonid escapement techniques. Rev. Fish. Sci. 18(4):301-314.
Pascoe, S, AE Punt, CM Dichmont. 2010. Targeting ability and output controls in Australia’s multi-species northern prawn fishery. Eur. Rev. Agric. Econ. 37(3):313-334. doi:10.1093/erae/jbq022
Perry, RW, JR Skalski, PL Brandes, PT Sandstrom, AP Klimley, A Ammann, B MacFarlane. 2010. Estimating survival and migration route probabilities of juvenile Chinook salmon in the Sacramento–San Joaquin River Delta. N. Am. J. Fish. Mgmt. 30:142-156.
Pietsch, TW. 2010. The World’s Smallest Sexually Mature Vertebrate. Practical Fishkeeping, January, 2010. Online: 3 September 2010.
Poff, NL, BD Richter, AH Arthington, SE Bunn, RJ Naiman, E Kendy, M Acreman, C Apse, BP Bledsoe, MC Freeman, J Henriksen, RB Jacobson, JG Kennen, DM Merritt, JH O’Keeffe, JD Olden. K Rogers, RE Tharme, A Warner. 2010. The ecological limits of hydrologic alteration (ELOHA): a new framework for developing regional environmental flow standards. Freshwat. Biol. 55:147-170.
Pool, TP, JD Olden, JB Whittier, CP Paukert. 2010. Environmental drivers of fish functional diversity and composition in the Lower Colorado River Basin. Can. J. Fish. Aquat. Sci. 67:1791-1807.
Punt, AE, RA Deng, CM Dichmont, T Kompas, WN Venables, S Zhou, S Pascoe, T Hutton, R Kenyon, T van der Velde, M Kienzle. 2010. Integrating size-structured assessment and bioeconomic management advice in Australia’s northern prawn fishery. Int. Council. Expl. Sea 67:1785-1801.
Rand, KM, DA Beauchamp, SA Lowe. 2010. Longitudinal growth differences and the influence of diet quality on Atka mackerel of the Aleutian Islands, Alaska: Using a bioenergetics model to explore underlying mechanisms. Mar. Coast. Fish. Dyn. Mgmt. Ecosys. Sci. 2:362-374.
Reed, TE, G Martinek, TP Quinn. 2010. Lake-specific variation in growth, migration timing and survival of juvenile sockeye salmon Oncorhynchus nerka: separating environmental from genetic influences. J. Fish Biol. 77:692-705. doi:10.1111/j.1095-8649.2010.02711.x.
Reed, TE, DE Schindler, RS Waples. 2010. Interacting effects of phenotypic plasticity and evolution on population persistence in a changing climate. Cons. Biol. doi:10.1111/j.1523-1739.2010.01552.x.
Reed, TE, RS Waples, DE Schindler, JJ Hard, MT Kinnison. 2010. Phenotypic plasticity and population viability: the importance of environmental predictability. Proc. Royal Soc. London B Biol. Sci. doi:10.1098/rspb.2010.0771. Available online.
Reum, JCP, ME Hunsicker, CE Paulsen. 2010. Species composition and relative abundance of large medusae in Puget Sound, Washington. Northw. Sci. 84(1):131-140.
Rogers, CS, TW Pietsch, JE Randall, RJ Arnold. 2010. The Sargassum frog-fish (Histrio histrio Linnaeus) observed in mangroves in St. John, U.S. Virgin Islands. Coral Reefs. Online: 18 June 2010. doi:10.1007/s00338-010-0636-z.
Ruggerone, RT, RM Peterman, B Dorner, KW Myers. 2010. Magnitude and trends in abundance of hatchery and wild pink salmon, chum salmon, and sockeye salmon in the North Pacific Ocean. Mar. Coast. Fish: Dynam., Mgmt., Ecosys. Sci. 2:306-328. doi:10.1577/C09-054.
Schindler, DE, R Hilborn, B Chasco, CP Boatright, TP Quinn, LA Rogers, MS Webster. 2010. Population diversity and the portfolio effect in an exploited species. Nature 465:609-613.
Seamons, TR, TP Quinn. 2010. Sex-specific patterns of lifetime reproductive success in single and repeat breeding steelhead trout (Oncorhynchus mykiss). Behav. Ecol. Sociobiol. 64:505–513. DOI 10.1007/s00265-009-0866-7.
Seeb, JE, CE Pascal, ED Grau, LW Seeb, WD Templin, T Harkins, SB Roberts. 2010. Transcriptome sequencing and high-resolution melt analysis advance SNP discovery in duplicated salmonids. Molec. Ecol. Resourc. Online. doi:10.1111/j.1755-0998.2010.02936.x.
Sethi, SA. 2010. Risk management for fisheries. Fish and Fisheries online, May 11, 2010. doi:10.1111/j.1467-2979.2010.00363.x.
Sethi, SA, TA Branch, R Watson. 2010. Global fishery development patterns are driven by profit but not tropic level. PNAS early edition, June 21, 2010. doi:10.1073/pnas.1003236107.
Skalski, JR, S Liao, RA Buchanan. 2010. Performance of three alternative estimators of stream residence time based on live and dead counts of salmonids. N. Am. J. Fish. Mgmt. 30:191-208. doi:10.1577/M08-237.1.
Skalski, JR, RL Townsend, TW Steig, S Hemstrom. 2010. Comparison of two alternative approaches for estimating dam passage survival of salmon smolts. N. Am. J. Fish. Mgmt. 30:831-839.
Sobocinski, KL, JR Cordell, CA Simenstad. 2010. Effects of shoreline modifications on supratidal macroinvertebrate fauna on Puget Sound, Washington beaches. Estuaries and Coasts 33:699-711.
Solomon, CT, JD Olden, PTJ Johnson, RT Dillon, MJ Vander Zanden. 2010. Distribution and community-level effects of the Chinese mystery snail (Bellamya chinensis) in northern Wisconsin lakes. Biol. Inv. 12:1591-1605.
Stewart, AL, TW Pietsch. 2010. A new species of deep-sea anglerfish, genus Himantolophus (Lophiiformes: Himantolophidae), from the Western South Pacific, with comments on the validity of H. pseudalbinares. Zootaxa 2671:53-60.
Stewart-Koster, B, SE Bunn, SJ Mackay, Poff, RJ Naiman, PS Lake. 2010. The use of Bayesian networks to guide investments in flow and catchment restoration for impaired river ecosystems. Freshwat. Biol. 55:243-260.
Stolnack, SA, RJ Naiman. 2010. Patterns of conifer establishment and vigor on montane river floodplains in Olympic National Park, Washington, USA. Can. J. For. Res. 40(3):410-422.
Strange, JS. 2010. Upper thermal limits to migration in adult Chinook salmon: evidence from the Klamath River basin. Trans. Am. Fish. Soc. 139:1091-1108.
Thorson, JT, J Berkson. 2010. Multispecies estimation of Bayesian priors for catchability trends and density dependence in the US Gulf of Mexico. Can. J. Fish. Aquat. Sci. 67:936-954. doi:10.1139/F10-040.
Utter, F, J Seeb. 2010. A perspective on positive relationships between genetic diversity and abundance in fishes. Molec. Ecol. 19:4831-4833.
Vadopalas, B, TW Pietsch, CS Friedman. 2010. The proper name for the Geoduck: resurrection of Panopea generosa Gould, 1850, from the synonymy of Panopea abrupta (Conrad, 1849) (Bivalvia: Myoida: Hiatellidae). Malacologia 52(1):169-173.
Van der Meijden, A, AP Summers, A Herrell 2010. Comparison of chela size and pincher force in scorpions; getting a first grip. J. Zool. 280:319-325.
Volk, EC, DL Bottom, KK Jones, CA Simenstad. 2010. Reconstructing juvenile Chinook salmon life history in the Salmon River estuary, Oregon using otolith microchemistry and microstructure. Trans. Am. Fish. Soc. 139:535-549. doi:10.1577/T08-163.1.
Ward, EJ, BX Semmens, DE Schindler. 2010. Including source uncertainty and prior information in the analysis of stable isotope mixing models. Environ. Sci. Tech. 44:4645-4650.
Westley, PAH, DE Schindler, TP Quinn, GT Ruggerone, R Hilborn. 2010. Natural habitat change, commercial fishing, climate, and dispersal interact to restructure an Alaskan fish metacommunity. Oecologia 163:471-484.
Wetchateng, T, CS Friedman, NA Wight, P-Y Lee, PH Teng, S Sriurairattana, K Wongprasert, B Withyachumnarnkul. 2010. Withering syndrome in the abalone Haliotis diversicolor supertexta. Dis. Aquat. Org. 90:69-76. doi:10.3354/dao02221.
Whitely Binder, L, J Krencicki Barcelos, DB Booth, M Darzen, M McGuire Elsner, R Fenske, TF Graham, AF Hamlet, J Hodges-Howell, JE Jackson, C Karr, PW Keys, JS Littell, N Mantua, J Marlow, D McKenzie, M Robinson-Dorn, EA Rosenberg, CO Stöckle, JA Vano. 2010. Preparing for climate change in Washington State. Climatic Change 102:351–376. doi:10.1007/s10584-010-9850-5.
Williams, AJ, LR Little, AE Punt, BD Mapstone, CR Davies, MR Heupel. 2010. Exploring movement patterns of an exploited coral reef fish when tagging data are limited. Mar. Ecol. Prog. Ser. 405:87-99.
Williams, K, AE Punt, CD Wilson, JK Horne. 2010. Length-selective retention of walleye pollock, Theragra chalcogramma, by midwater trawl. ICES J. Mar. Sci. 68: 119-129.
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Woody, CA, RM Hughes, EJ Wagner, TP Quinn, LH Roulson, LM Martin, K Griswold. 2010. The Mining Law of 1872: Change is overdue. Fisheries 35: 321-331.
Xiaoxi, L, MN Dean, AP Summers, JC Earthman. 2010. Composite model of the shark's skeleton in bending: a novel architecture for biomimetic design of functional compression bias. Matls. Sci. Engineer. C:1077-1086.
Zhou, S, ADM Smith, AE Punt, AJ Richardson, M Gibbs, EA Fulton, S Pascoe, C Bulman, B Bayliss, K Sainsbury. 2010. Ecosystem-based fisheries management requires a change to the selective fishing philosophy. PNAS 107(21):9485-9489. doi:10.1073/pnas.0912771107.
2011
Abdul-Aziz, OI, NJ Mantua, KW Myers. 2011. Potential climate change impacts on thermal habitats of Pacific salmon (Oncorhynchus spp.) in the North Pacific Ocean and adjacent seas. Can. J. Fish. Aqut. Sci. 68:1660-1680. doi:10.1139/F2011-079.
Arnold, RJ, TW Pietsch. 2011. A new species of frogfish of the Genus Histiophryne (Teleostei: Lophiiformes: Antennariidae) from Queensland, Australia. Zootaxa 2925:63-68.
Arnold, RJ, TW Pietsch. 2011. Evolutionary history of frogfishes (Teleostei: Lophiiformes: Antennariidae): a molecular approach. Mol. Phylogen. Evol. 62(2012):117-129.
Baker, MR, NW Kendall, TA Branch, DE Schindler, TP Quinn. 2011. Selection due to nonretention mortality in gillnet fisheries for salmon. Evol. Applic. 4:429-443. doi:10.1111/j.1752-4571.2010.00154.x.
Banobi, JA, TA Branch, R Hilborn. 2011. Do rebuttals affect future science? Ecosphere 2(3):art37. doi:10.1890/ES10-00142.1.
Barcelo-Colijn, G, ML Martin, RFM de Almeida, MA Noguera-Salva, A Marcilla-Etxenike, F Guardiola-Serrano, A Luth, B Kleuser, JE Halver, PV Escriba. 2011. Sphingomyelin and sphingomyelin synthase (SMS) in the malignant transformation of glioma cells and in 2-hydroxyoleic acid therapy. PNAS 108(49):19569-19574. doi:10.1073/pnas.1115484108.
Beaudreau, AH, TE Essington. 2011. Use of pelagic prey subsidies by demersal predators in rocky reefs: insight from movement patterns of lingcod. Mar. Biol. 158:471-483.
Beer, WN, JJ Anderson. 2011. Sensitivity of juvenile salmonid growth to future climate trends. River Res. Applic. 27(5):663-669. doi:10.1002/rra.1390.
Biggs, CR, JD Olden. 2011. Multi-scale habitat occupancy of invasive lionfish (Pterois volitans) in coral reef environments of Roatan, Honduras. Aquatic Invasions 6:447-453. doi: 10.3391/ai.2011.6.3.11.
Born, EW, A Heilmann, L Kielsen Holm, KL Laidre. 2011. Polar bears in Northwest Greenland – An interview survey about the catch and the climate. Monographs on Greenland (Meddelelser om Grønland) Vol. 351. ISBN 9788763531689. 250 p.
Boström, C, SJ Pittman, C Simenstad, RT Kneib. 2011. Seascape ecology of coastal biogenic habitats: advances, gaps, and challenges. Pages 191-217 in S Pittman, R Kneib, C Simenstad, I Nagelkerken (eds), Seascape Eecology: Application of Landscape Ecology to the Marine Environment. Mar. Ecol. Prog. Ser. 427:187-302. doi:10.3354/meps09139.
Bradford, AL, DW Weller, AM Burdin, RL Brownell, Jr. 2011. Using barnacle and pigmentation characteristics to identify gray whale calves on their feeding grounds. Mar. Mamm. Sci. 27:644-651. doi:10.1111/j.1748-7692.2010.00413.x.
Branch, TA, OP Jensen, D Ricard, Y Ye, R Hilborn. 2011. Contrasting global trends in marine fishery status obtained from catches and from stock assessments. Cons. Biol. 25:777-786. doi:10.1111/j.1523-1739.2011.01687.x.
Brieuc MSO, Naish KA. 2011. Detecting signatures of positive selection in partial sequences generated on a large scale: pitfalls, procedures and resource. Mol. Ecol. Resourc. 11:172-183.
Burge, CA, RE Strenge, CS Friedman. 2011. Detection of the oyster herpesvirus in commercial bivalves in northern California, USA: conventional and quantitative PCR. Dis. Aquat. Org. 94:107-116. doi:10.3354/dao02314.
Carlson, SM, TP Quinn, AP Hendry. 2011. Eco-evolutionary dynamics in Pacific salmon. Heredity 106:438-447. doi:10.1038/hdy.2010.163.
Carey, MP, BL Sanderson, TA Friesen, KA Barnas, JD Olden. 2011. Smallmouth bass in the Pacific Northwest: A threat to native species; a benefit for anglers. Rev. Fish. Sci. 19:305-315. doi: 10.1080/10641262.2011.598584.
Carnevale, G, TW Pietsch. 2011. Batfishes (Teleostei: Ogcocephalidae) from the Eocene of Monte Bolca. Geol. Mag. 148:461-472.
Carnevale, G, S Godfrey, TW Pietsch. 2011. Stargazer (Teleostei, Uranoscopidae) cranial remains from the Miocene Calvert Cliffs, Maryland (St. Marys Formation, Chesapeake Group). J. Vert. Paleo. 31(6):1200-1209.
Chamberlin, JW, TE Essington, JW Ferguson, TP Quinn. 2011. The influence of hatchery rearing practices on salmon migratory behavior: Is the tendency of Chinook salmon to remain within puget sound affected by size and date of release? Trans. Am. Fish. Soc. 140:5, 1398-1408. doi:10.1080/00028487.2011.623993.
Chamberlin, JW, AN Kagley, KL Fresh, TP Quinn. 2011. Movements of yearling chinook salmon during the first summer in marine waters of Hood Canal, Washington. Trans. Am. Fish. Soc. 140:2, 429-439. doi:10.1080/00028487.2011.572006.
Chauvenet, ALM, SM Durant, R Hilborn, N Pettorelli. 2011. Unintended consequences of conservation actions: managing disease in complex ecosystems. PLOS One 6:e28671. doi:10.1371/journal.pone.0028671.
Cope, JM, AE Punt. 2011. Reconciling stock assessment and management scales under conditions of spatially varying catch histories. Fish. Res. 107:22–38. doi:10.1016/j.fishres.2010.10.002.
Cordell, JR, JD Toft, A Gray, GT Ruggerone, M Cooksey. 2011. Functions of restored wetlands for juvenile salmon in an industrialized estuary. Ecol. Engineer. 37:343-353. doi:10.1016/j.ecoleng.2010.11.028.
Corenblit, D, ACW Baas, G Bornette, S Delmotte, RA Francis, AM Gurnell, F Julien, RJ Naiman, J Steiger. 2011. Feedbacks between geomorphology and biology controlling Earth surface processes and landforms: A review of foundation concepts and current understandings. Earth. Sci. Rev. 106:307-331.
Cowan, JH, Grimes, CB, Patterson, WF, Walters, CJ, Jones, AC, Lindberg, WJ, Sheehy, DJ, Pine, WE, Powers, JE, Campbell, MD, Lindeman, KC, Diamond, SL, Hilborn, R, Gibson, HT, Rose, KA. 2011. Red snapper management in the Gulf of Mexico: science- or faith-based? Rev. Fish Biol. Fish. 21:187-204.
Cucherousset, J, JD Olden. 2011. Ecological impacts of non-native freshwater fishes. Fisheries 36:215-230.
Dean, MN, Summers, AP, Ferry, LA. 2011. Very low pressures drive ventilatory flow in chimaeroid fishes. J. Morphol. (1931) 273:461-479.
Diefenderfer, HL, RM Thom, GE Johnson, JR Skalski, KA Vogt, BD Ebberts, GC Roegner, DM Dawley. 2011. A levels-of-evidence approach for assessing cumulative ecosystem response to estuary and river restoration programs. Ecol. Restor. 29(1-2):111-132.
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Su, N-J, C-L Sun, AE Punt, S-Z Yeh, G Dinardo. 2011. Evaluation of a spatially sex-specific assessment method incorporating a habitat preference model for blue marlin (Makaira nigricans) in the Pacific Ocean. Fish. Oceanogr. 20:5, 415-433. doi:10.1111/j.1365-2419.2011.00593.x.
Su, N-J, C-L Sun, AE Punt, S-Z Yeh, G DiNardo. 2011. Modelling the impacts of environmental variation on the distribution of blue marlin, Makaira nigricans, in the Pacific Ocean. ICES J. Mar. Sci. 68(6):1072–1080. doi:10.1093/icesjms/fsr028.
Templin, WD, JE Seeb, JR Jasper, AW Barclay, LW Seeb. 2011. Genetic differentiation of Alaska Chinook salmon: the missing link for migratory studies. Molec. Ecol. Resourc. 11(Suppl. 1):226-246. doi:10.1111/j.1755-0998.2010.02968.x.
Thomsen, MS, JD Olden, T Wernberg, JN Griffin, BR Silliman. 2011. A broad framework to organize and compare ecological invasion impacts. Environ. Res. 111(7):899-908. doi:10.1016/j.envres.2011.05.024.
Thomsen, MS, T Wernberg, JD Olden, JN Griffin, BR Silliman. 2011. A framework to study the context-dependent impacts of marine invasions. J. Exper. Mar. Biol. Ecol. 400:322-327. doi:10.1016/j.jembe.2011.02.033.
Thorson, JT. 2011. Auxiliary and focal assessment models: a proof-of-concept involving time-varying catchability and fishery stock-status evaluation. ICES J. Mar. Sci. 28(10):2264-2276. doi: 10.1093/icesjms/fsr160.
Thorson, JT, MH Prager. 2011. Better catch curves: incorporating age-specific natural mortality and logistic selectivity. Trans. Am. Fish. Soc. doi:10.1080/00028487.2011.557016.
Thorson, JT, IJ Stewart, AE Punt. 2011. Accounting for fish shoals in single- and multispecies survey data using mixture distribution models. Can. J. Fish. Aquat. Sci. 68:1681-1693. doi:10.11.39/F2011-086.
Toft, JE, AE Punt, LR Little. 2011. Modelling the economic and ecological impacts of the transition to individual transferable quotas in the multispecies US west coast groundfish trawl fleet. ICES J. Mar. Sci. 68(7):1566-1579. doi:10.1093/icesjms/fsr095.
Vynne, C, JR Skalski, RB Machado, MJ Groom, ATA Jácomo, J Marinho-Filho, MB Ramos Neto, C Pomilla, L Silveira, H Smith, SK Wasser. 2011. Effectiveness of scat-detection dogs in determining species presence in a tropical savanna landscape. Cons. Biol. 25(1):154-162. doi:10.1111/j.1523-1739.2010.01581.
Weitkamp, LA, JA Orsi, KW Myers, RC Francis. 2011. Contrasting early marine ecology of Chinook salmon and coho salmon in Southeast Alaska: insight into factors affecting marine survival. Mar. Coast. Fish. 3:1, 233-249. doi:10.1080/19425120.2011.588919.
Wetzel, CR, AE Punt. 2011. Model performance for the determination of appropriate harvest levels in the case of data-poor stocks. Fish. Res. 110:342-355. doi:10.1016/j.fishres.2011.04.024.
Wetzel, CR, AE Punt. 2011. Performance of a fisheries catch-at-age model (stock synthesis) in data-limited situations. Mar. Freshwat. Res. 62:927-936. doi:10.1071/MF11006.
Wiig, Ø, L Bachmann, MP Heide-Jørgensen, C Lindquist, KL Laidre, L Postma, L Dueck, P Palsbøll, L Bachmann. 2011. Recaptures of genotyped bowhead whales (Balaena mysticetus) in Eastern Canada and West Greenland. Endang. Spec. Res. 14: 235-242
Wiig, Ø, MP Heide-Jørgensen, KL Laidre, E Garde, R Reeves. 2011. Geographic variation in cranial morphology of narwhals (Monodon monoceros) from Greenland and the Eastern Canadian Arctic. Pol. Biol. doi:10.1007/s00300-011-1032-z.
Williams, R, S Hedley, TA Branch, M Bravington, AN Zerbini, K Findlay. 2011. Chilean blue whales as a case study to illustrate methods to estimate abundance and evaluate conservation status of rare species. Cons. Biol. 25:526-535. doi:10.1111/j.1523-1739.2011.01656.x.
Williams, R, M Krkođek, E Ashe, TA Branch, S Clark, PS Hammond, E Hoyt, DP Noren, D Rosen, A Winship. 2011. Competing conservation objectives for predators and prey: estimating killer whale prey requirements for Chinook salmon. PLoS ONE 6(11):e26738. doi:26710.21371/journal.pone.0026738.
Wu, H, Kimball, J, Mantua, N, Stanford, J. 2011. Automated upscaling of river networks for macroscale hydrological modeling. Wat. Resour. Res. 47(W03517). doi:10.1029/2009WR008871.
Yamamoto, Y, JA Luckenbach, FW Goetz, G Young, P Swanson. 2011. Disruption of the salmon reproductive endocrine axis through prolonged nutritional stress: Changes in circulating hormone levels and transcripts for ovarian genes involved in steroidogenesis and apoptosis. Gen. Comp. Endocrinol. 172:331-343.
Zabel, RW, Levin, PS, Tolimieri, N, Mantua, N. 2011. Interactions between climate and population density in the episodic recruitment of bocaccio, Sebastes paucispinis, a Pacific rockfish. Fish. Oceanogr. 20(4):294-304. doi:10.1111/j.1365-2419.2011.00584.x.
Zerbini, AN, A Andriolo, MP Heide Jorgensen, S Moreira, JL Pizzorno, YG Maia, GR VanBlaricom, DP DeMaster. 2011. Migration and summer destinations of humpback whales (Megaptera novaeangliae) in the western South Atlantic Ocean. J. Cetacean. Res. Manage. (Spec. Iss.) 3:113-118.
Zhou, S, AE Punt, R Deng, J Bishop. 2011. Estimating multifleet catchability coefficients and natural mortality from fishery catch and effort data: comparison of Bayesian state–space and observation error models. Can. J. Fish. Aquat. Sci. 68:1171-1181. doi:10.1139/F2011-052.
Zhou, S, AE Punt, R Deng, M Kienzle, W Rochester. 2011. Bayesian fishable biomass dynamics models incorporating fished area and relative fish density. Can. J. Fish. Aquat. Sci. 68:1603-16124. doi:10.1139/F2011-083.
Zinger, L, LA Amaral-Zettler, JA Fuhrman, MC Horner-Devine, SM Huse, DBM Welch, JBH Martiny, ML Sogin, A Boetius, A Ramette. 2011. Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. PLoS ONE 6(9):e24570.
2012
Anderson, S. C., T. A. Branch, D. Ricard, and H. K. Lotze. 2012. Assessing global marine fishery status with a revised dynamic catch-based method and stock-assessment reference points. ICES Journal of Marine Science 69:1491-1500. doi: 10.1093/icesjms/fss105.
Anderson, RC, TA Branch, A Alagiyawadu, R Baldwin, F Marsac. 2012. Seasonal distribution, movements and taxonomic status of blue whales (Balaenoptera musculus) in the northern Indian Ocean. J. Cetacean. Res. Manage. 12(2):203-218.
Anderson, JJ, PL Faulds, WI Atlas, TP Quinn. 2012. Reproductive success of captively bred and naturally
spawned Chinook salmon colonizing newly accessible habitat. Evol. Applic. doi:10.1111/j.1752-4571.2012.00271.x
Andrews, KS, TP Quinn. 2012. Combining fishing and acoustic monitoring data to evaluate the distribution and movements of spotted ratfish Hydrolagus colliei. Mar. Biol. 159:769-782.
Atcheson, ME, KM Myers, DA Beauchamp, and NJ Mantua. 2012. Bioenergetic response by steelhead to variation in diet, thermal habitat, and climate in the North Pacific Ocean. Trans Am. Fish Soc. 141:1081-1096. doi:10.1080/00028487.2012.675914.
Atcheson, ME, KW Myers, ND Davis, NJ Mantua. 2012. Potential trophodynamic and environmental drivers of steelhead (Oncorhynchus mykiss) productivity in the North Pacific Ocean. Fisheries Oceanography. Online: doi:10.1111/j.1365-2419.2012.00627.x.
Bouma, JV, Rothaus, DP, Straus, KM, Vadopalas, B, Friedman, CS. 2012. Low juvenile pinto abalone (Haliotis kamtschatkana kamtschatkana) abundance in the San Juan Archipelago, Washington State. Trans. Am. Fish. Soc. 141:76-83.
Bradford, AL, DW Weller, AE Punt, YV Ivashchenko, AM Burdin, GR VanBlaricom, RL Brownell, Jr. 2012. Leaner leviathans: body condition variation in a critically endangered whale population. J. Mammal. 93(1):251-266. doi:10.1644/11-MAMM-A-091.1.
Bradley, BA, DM Blumenthal, RI Early, ED Grosholz, JJ Lawler, LP Miller, CJB Sorte, CM D'Antonio, JM Diez, JS Dukes, I Ibanez, JD Olden. 2012. Global change, global trade, and the next wave of plant invasions. Front. Ecol. Environ. 10:20-28.
Branch, TA. 2012. FAO's State of Fisheries and Aquaculture: correcting some misrepresentations by Pauly and Froese. Mar. Pol. 36:1191-1192. doi:10.1016/j.marpol.2012.02.026.
Branch, TA, JD Austin, K Acevedo-Whitehouse, IJ Gordon, ME Gompper, TE Katzner, N Pettorelli. 2012. Fisheries conservation and management: finding consensus in the midst of competing paradigms. Animal Conservation 15:1-3. doi:10.1111/j.1469-1795.2011.00502.x.
Britton-Simmons, KH, AL Rhoades, RE Pacunski, AWE Galloway, AT Lowe, EA Sosik, MN Dethier, DO Duggins. 2012. Habitat and bathymetry influence the landscape-scale distribution and abundance of drift macrophytes and associated invertebrates. Limnol. Oceanogr. 57:176-184. doi:10.4319/lo.2012.57.1.0176.
Buhle, ER, Feist, BE, and Hilborn, R. 2012. Population dynamics and control of invasive Spartina alterniflora: inference and forecasting under uncertainty. Ecol. Appl. 22:880-893.
Carnevale, G, TW Pietsch. 2012. Caruso, a new genus of Anglerfishes from the Eocene of Monte Bolca, Italy, with a comparative osteology and phylogeny of the Family Lophiidae (Teleostei: Lophiiformes). J. Paleontol. 10(1):47-72.
Costello, C, D Ovando, R Hilborn, SD Gaines, O Deschenes, SE Lester. 2012. Status and Solutions for the World’s Unassessed Fisheries. Science Early Online. doi:10.1126/science.1223389.
Ernst, B, DA Armstrong, J Burgos, JM Orensanz. 2012. Life history schedule and periodic recruitment of female snow crab (Chionoecetes opilio) in the eastern Bering Sea. Can. J. Fish. Aquat. Sci. 69:532-550. doi:10.1139/F2011-173.
Erös, T, JD Olden, RS Schick, D Schmera, M-J Fortin. 2012. Characterizing connectivity relationships in freshwaters using patch-based graphs. Landscape Ecol. 27:303-317.
Essington, TE, MC Melnychuk, TA Branch, SS Heppell, OP Jensen, JS Link, SJD Martell, AM Parma, JG Pope, ADM Smith. 2012. Catch shares, fisheries, and ecological stewardship: a comparative analysis of resource responses to a rights-based policy instrument. Cons. Let. 5:186-195. doi:10.1111/j.1755-263X.2012.00226.x.
Gomez-Uchida, D, JE Seeb, C Habicht, LW Seeb. 2012. Allele frequency stability in large, wild exploited populations over multiple generations: insights from Alaska sockeye salmon (Oncorhynchus nerka). Can. J. Fish. Aquat. Sci. 69:916-929. doi:10.1139/F2012-029.
Gutiérrez, N. L., S. R. Valencia, T. A. Branch, D. J. Agnew, J. K. Baum, P. L. Bianchi, J. Cornejo-Donoso, C. Costello, O. Defeo, T. E. Essington, R. Hilborn, D. D. Hoggarth, A. E. Larsen, C. Ninnes, K. Sainsbury, R. L. Selden, S. Sistla, A. D. M. Smith, A. Stern-Pirlot, S. J. Teck, J. T. Thorson, and N. E. Williams. 2012. Eco-label conveys reliable information on fish stock health to seafood consumers. PLoS ONE 7(8):e43765. doi: 10.1371/journal.pone.0043765.
Heide-Joergensen, MP, Laidre, KL, Hansen, RG, Burt, ML, Simon, M, Borchers, DL, Hansen, J, Harding, K, Rasmussen, M, Dietz, R,Teilmann, J. 2012. Rate of increase and current abundance of humpback whales in West Greenland. J. Cetacean Res. Manage. 12(1):1-14.
Heide-Joergensen, MP, Laidre, KL, Litovka, D, Villum Jensen, M, Grebmeier, J, Sirenko, BI. 2012. Identifying gray whale (Eschrichtius robustus) foraging grounds along the Chukotka Peninsula, Russia, using satellite telemetry. Polar Biol. 35:1035-1045. doi:10.1007/s00300-011-1151-6.
Hilborn, R. 2012. The evolution of quantitative marine fisheries management 1985-2010. Nat. Res. Model. 25:122-144.
Hilborn, R, IJ Stewart, TA Branch, AP Jensen. 2012. Defining trade-offs among conservation, profitability, and food security in the California Current bottom-trawl fishery. Cons. Biol. 26(2):257-266. doi:10.1111/j.1523-1739.2011.01800.x.
Iwamoto, T, GM Cailliet, DM Cohen, TW Pietsch, T Tucker, RJ Larson, ML Martin. 2011. Margaret G. Bradbury (1927–2010). Copeia 2011(4):599-605.
Jensen, OP, TA Branch, R Hilborn. 2012. Marine fisheries as ecological experiments. Theoret. Ecol. 5:3-22.
Kemp, PS, JJ Anderson, AS Voles. 2012. Quantifying behaviour of migratory fish: Application of signal detection theory to fisheries engineering. Ecol. Engineer. 41: 22-31. doi:10.1016/j.ecoleng.2011.12.013.
Kendall, NW, TP Quinn. 2012. Quantifying and comparing size selectivity among Alaskan sockeye salmon fisheries. Ecol. Applic. 22(3):804-816.
Kuehne, LM, JD Olden. 2012. Prey naivety in the behavioural responses of juvenile Chinook (Oncorhynchus tshawytscha) salmon to an invasive predator. Freshwat. Biol. 57:1126-1137. doi:10.1111/j.1365-2427.2012.02776.x.
Laidre, KL, Heide-Joergensen, MP. 2012. Spring partitioning of Disko Bay, West Greenland, by Arctic and Subarctic baleen whales. ICES. J. Mar. S. doi:10.1093/icesjms/fss095.
Laidre, KL, Heide-Jorgensen, MP, Stern, H, Richard, P. 2012. Unusual sea ice entrapments and delayed autumn freeze-up trends. Polar Biol. 35:149-154. doi:10.1007/s00300-011-1036-8.
Lepak, JM, KD Kinzli, ER Fetherman, WM Pate, AG Hansen, EI Gardunio, CN Cathcart, WL Stacy, ZE Underwood, MM Brandt, CA Myrick, BM Johnson. 2012. Manipulation of growth to reduce mercury concentrations in sport fish on a whole-system scale. Can. J. Fish. Aquat. Sci 69:122-135. doi:10.1139/F2011-136.
Metzger DC, P Pratt, SB Roberts. 2012. Characterizing the effects of heavy metal and Vibrio exposure on hsp70 expression in Crassostrea gigas gill tissue. J. Shellfish Res. 31(3):627-630. doi:10.2983/035.031.0305.
Mims, MC, JD Olden. 2012. Life history theory predicts fish assemblage response to hydrologic regimes. Ecology 93:35-45. doi:10.1890/11-0370.1.
Mongillo, TM, EE Holmes, DP Noren, GR VanBlaricom, AE Punt, SM O'Neill, GM Ylitalo, MB Hanson, PS Ross. 2012. Predicted polybrominated diphenyl ether (PBDE) and polychlorinated biphenyl (PCB) accumulation in southern resident killer whales. Mar. Ecol. Prog. Ser. 453:263-277. doi:10.3354/meps09658.
Pietsch, TW, JW Orr, WN Eschmeyer. 2012. Mustelus felis Ayres, 1854, a Senior Synonym of the Leopard Shark, Triakis semifasciata Girard, 1855 (Carchariniformes: Triakidae), Invalidated by "Reversal of Precedence". Copeia 2012(1):98-99.
Pikitch, EK, Rountos, KJ, Essington, TE, Santora, C, Pauly, D., Watson, R., Sumaila, UR, Boersma, PD, Boyd, IL, Conover, DO, Cury, P., Heppell, SS, Houde, ED, Mangel, M. Playganyi, E., Sainsbury, K., Steneck, RS, Gees, TM, Gownaris, N., Munch, SB. 2012. The global contribution of forage fish to marine fisheries and ecosystems. Fish and Fisheries.
Punt, AE, McGarvey, R, Linnane, A, Phillips, J, Triantafillos, L, Feenstra, J. 2012. Evaluating empirical decision rules for southern rock lobster fisheries: A South Australian example. Fish Res 115-116:60-71. doi:10.1016/j.fishres.2011.11.010.
Quinn, TP, Dittman, AH, Barrett, H, Cunningham, C, Bond, MH. 2012. Chemosensory responses juvenile coho salmon, Oncorhynchus kisutch, Dolly Varden, Salvelinus malma, and sculpins (Cottus spp.) to eggs and other tissues from adult Pacific salmon. Environ. Biol. Fishes 95:301-307. doi:10.1007/s10641-012-9996-2.
Quinn, TP, NW Kendall, HB Rich, Jr, BE Chasco. 2012. Diel vertical movements, and effects of infection by the cestode Schistocephalus solidus on daytime proximity of three-spined sticklebacks Gasterosteus aculeatus to the surface of a large Alaskan lake. Oecologia 168:43-51. doi:10.1007/s00442-011-2071-4.
Quinn, TP, HB Rich, Jr, D Gosse, N Schtickzelle. 2012. Population dynamics and asynchrony at fine spatial scales: a case history of sockeye salmon (Oncorhynchus nerka) population structure in Alaska, USA. Can. J. Fish. Aquat. Sci. 69:297-306. doi:10.1139/F2011-147.
Quinn, TP, TR Seamons, SP Johnson. 2012. Stable isotopes of carbon and nitrogen indicate differences in marine ecology between wild and hatchery-produced steelhead. Trans. Am. Fish. Soc. 141:2, 526-532. doi:10.1080/00028487.2012.670188.
Quinn, TP, CJ Sergeant, AH Beaudreau, DA Beauchamp. 2012. Spatial and temporal patterns of vertical distribution for three planktivorous fishes in Lake Washington. Ecol. Freshwat. Fish. doi:10.1111/j.1600-0633.2012.00554.x.
Quinn, TP, R Sharma. 2012. Linkages between life history type and migration pathways in freshwater and marine environments for Chinook salmon, Oncorhynchus tshawytscha. Acta Oecologica 41:1-13. doi:10.1016/j.actao.2012.03.002.
Richardson, JS, RJ Naiman, PA Bisson. 2012. How did fixed-width buffers become the standard practice for protecting freshwaters from forest harvest practices? Freshwat. Sci. 31:232-238.
Roberts, SB, L Hauser, LW Seeb, JE Seeb. 2012. Development of genomic resources for Pacific herring through targeted transcriptome pyrosequencing. PLOS One 7(2):e30908. doi:10.1371/journal.pone.0030908.
Rode, KD, E Peacock, M Taylor, I Stirling, EW Born, KL Laidre, O Wiig. 2012. A tale of two polar bear populations: ice habitat, harvest, and body condition. Pop Ecol. 54:3-18. doi:10.1007/S10144-011-0299-9.
Schoen, ER, DA Beauchamp, and NC Overman. 2012. Quantifying Latent Impacts of an Introduced Piscivore: Pulsed Predatory Inertia of Lake Trout and Decline of Kokanee. Trans. Am. Fish. Soc. 141:1191-1206. doi:10.1080/00028487.2012.681104.
Seamons, TR, L Hauser, KA Naish, TP Quinn. 2012. Can interbreeding of wild and artificially propagated animals be prevented by using broodstock selected for a divergent life history? Evol. Applic. doi:10.1111/j.1752-4571.2012.00247.x.
Sethi, SA, M Dalton, R Hilborn. 2012. Quantitative risk measures applied to Alaskan commercial fisheries. Can. J. Fish. Aquat. Sci. 69:487-498.
Skalski, JR, TW Steig, SL Hemstrom. 2012. Assessing compliance with fish survival standards: a case study at Rock Island Dam, Washington. Envir. Sci. Pol. 18:45-51. doi:10.1016/j.envsci.2012.01.001.
Sremba, AL, B Hancock-Hanser, TA Branch, RL LeDuc, and CS Baker. 2012. Circumpolar diversity and geographic differentiation of mtDNA in the critically endangered Antarctic blue whale (Balaenoptera musculus intermedia). PLoS ONE 7(3):e32579. doi:10.1371/journal.pone.0032579.
Su, NJ, CL Sun, AE Punt, SZ Yeh, G DiNardo. 2012. Incorporating habitat preference into the stock assessment and management of blue marlin (Makaira nigricans) in the Pacific Ocean. Mar. and Fresh. Res. 63, 565–575. doi:10.1071/MF11244.
Szuwalski, C, Punt, AE. 2012. Identifying research priorities for management under uncertainty: The estimation ability of the stock assessment method used for eastern Bering Sea snow crab (Chionoecetes opilio). Fish. Res. 134-136: 82-94.
Thorson, JT, Branch, TA, Jensen, OP. 2012. Using model-based inference to evaluate global fisheries status from landings, location, and life history date. Can. J. Fish. Aquat. Sci. 69:645-655.
Thorson, J. T., J. M. Cope, T. A. Branch, and O. P. Jensen. 2012.Spawning biomass reference points for exploited marine fishes, incorporating taxonomic and body size information. Canadian Journal of Fisheries and Aquatic Sciences 69:1556-1568. doi:10.1139/F2012-077.
Thorson, JT, IJ Stewart, AE Punt. 2012. Development and application of an agent based model to evaluate methods for estimating relative abundance indices for shoaling fish such as Pacific rockfish (Sebastes spp.). ICES J. Mar. Sci. doi:10.1093/icesjms/fss003.
Urmy, SS, JK Horne, DH Barbee. 2012. Measuring the vertical distributional variability of pelagic fauna in Monterey Bay. ICES J. Mar. Sci. doi:10.1093/icesjms/fsr205.
Wilmers, CC, Estes, JA, Edwards, M, Laidre, KL, Konar, B. 2012. Do trophic cascades affect the storage and flux of atmospheric carbon? An analysis of sea otters and kelp forests. Front Eco.l Environ. 10:409-415. doi:10.1890/110176.
Zhou, S, Yin, S, Thorson, JT, Smith, ADM, Fuller, M. 2012. Linking fishing mortality reference points to life history traits: an empirical study. Can. J. Fish. Aquat. Sci. 69: 1292-1301. doi:10.1139/F2012-060.
2013
Branch, T. A., B. M. DeJoseph, L. J. Ray, and C. A. Wagner. 2013. Impacts of ocean acidification on marine seafood. Trends in Ecology and Evolution 28: 178-186. doi:10.1016/j.tree.2012.10.001
Branch, T. A. 2013. Citation patterns of a controversial and high-impact paper: Worm et al. (2006) Impacts of biodiversity loss on ocean ecosystem services. PLOS ONE 8(2):e56723. doi:10.1371/journal.pone.0056723.
Hilborn, R. and T. A. Branch. 2013. Does catch reflect abundance? No, it is misleading. Nature 494:303-306. doi:10.1038/494303a.
