UW School of Aquatic & Fishery Sciences
Journal Articles, 1991—present
2001 | 2002 | 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009
2001
Allendorf, FW, P Spruell, FM Utter. 2001. Whirling disease and wild trout: Darwinian fisheries management. Fisheries May:27-29.
Barry, TP, MJ Unwin, JA Malison, TP Quinn. 2001. Free and total cortisol levels in semelparous and iteroparous chinook salmon. J. Fish Biol. 59:1673-1676.
Beauchamp, DA, JJ Van Tassell. 2001. Modeling trophic interactions of bull trout in Lake Billy Chinook, Oregon. Trans. Am. Fish. Soc. 130:204-216.
Beer, WN, JJ Anderson. 2001. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook. Can. J. Fish. Aquat. Sci. 58:943-949.
Bentzen, P, JB Olsen, JE McLean, TR Seamons, TP Quinn. 2001. Kinship analysis of Pacific salmon: Insights into mating, homing, and timing of reproduction. J. Hered. 92:127-136.
Branch, TA. 2001. A review of orange roughy Hoplostethus atlanticus fisheries, estimation methods, biology and stock structure. In AIL Payne, SC Pillar, RJM Crawford (eds), A Decade of Namibian Fisheries Science. Spec. Ed., S. Afr. J. Mar. Sci. 23:181-203.
Branch, TA, DS Butterworth. 2001. Estimates of abundance south of 60S for cetacean species sighted frequently on the 1978/79 to 1997/98 IWC/IDCR-SOWER sighting surveys. J. Cetac. Res. Manage. 3(3):251-270.
Branch, TA, DS Butterworth. 2001. Southern Hemisphere minke whales: standardised abundance estimates from the 1978/79 to 1997/98 IDCR-SOWER surveys. J. Cetac. Res. Manage. 3(2):143-174.
Britt, LL, ER Loew, WN McFarland. 2001. Visual pigments in the early life stages of Pacific Northwest marine fishes. J. Exper. Biol. 204:2581-2587.
Courtenay, S.C., T.P. Quinn, H.M.C. Dupuis, C. Groot and P.A. Larkin. 2001. Discrimination of family-specific odours by juvenile coho salmon: roles of learning and odour concentration. J. Fish Biol. 58:107-125.
Cui, G, NJ Bax, AE Punt, IA Knuckey. 2001. Estimating gill-net selectivity for five species caught in the South East Fishery, Australia. Mar. Freshwat. Res. 52:691-699.
DeInnocentiis, S, L Sola, S Cataudella, P. Bentzen. 2001. Allozyme and microsatellite loci provide discordant estimates of population differentiation in the endangered dusky grouper (Epinephelus marginatus) within the Mediterranean Sea. Mol. Ecol. 10:2163-2175.
Farkas, T, E Fodor, K Kitajka, JE Halver. 2001. Response of fish membranes to environmental temperature. Aquacult. Res. 32:645-655.
Finley, CA, TJ Mulligan, CS Friedman. 2001. Life history of an exotic sabellid polychaete, Terebrasabella heterouncinata: Fertilization strategy and influence of temperature on reproduction. J. Shellfish Res. 20(2):883-888.
Foster, MS, GR VanBlaricom. 2001. Spatial variation in kelp forest communities along the Big Sur coast of central California, USA. Cryptogamie Algol. 22:173-186.
Friedland, KD, RV Walker, ND Davis, KW Myers, GW Boehlert, S Urawa, Y Ueno. 2001. Open-ocean orientation and return migration routes of chum salmon based on temperature data from data storage tags. Mar. Ecol. Prog. Ser. 216:235-252.
Gende, SM, TP Quinn, MF Willson. 2001. Consumption choice by bears feeding on salmon. Oecologia 127:372-382.
Gerber, LR, R Hilborn. 2001. Catastrophic events and recovery from low densities in populations of otariids: implication for risk of extinction. Mamm. Rev. 11:131-150.
Gerber, LR, GR VanBlaricom. 2001. Implications of three viability models for the conservation status of the western population of Steller sea lions (Eumetopias jubatus). Biol. Cons. 102:261-269.
Gove, NE, RT Edwards, LL Conquest. 2001. Effects of scale on land use and water quality relationships: a longitudinal basin-wide perspective. J. Am. Wat. Resourc. Assoc. 37:1721-1734.
Jech, JM, JK Horne. 2001. Effects of in situ target spatial distributions on acoustic density estimates. ICES J. Mar. Sci. 58:123-136.
Halver, JE. 2001. Editorial and priorities for needs in fish nutrition research. Aquacult. Res. 32:611-614.
Halver, JE. 2001. My 50 years in fish nutrition 1949-1999. Aquacult. Res. 32:615-622.
Hauser L., C Turan, GR Carvalho. 2001. Haplotype frequency distribution and discriminatory power of two mtDNA fragments in a marine pelagic teleost (Atlantic herring, Clupea harengus). Heredity 87:621-630.
Hershberger, PK, RM Kocan, NE Elder, GD Marty, J Johnson. 2001. Management of Pacific herring spawn-on-kelp fisheries to optimize fish health and product quality. N. Am. J. Fish. Mgmt 21:976-981.
Hilborn, R. 2001. Calculation of biomass trend, exploitation rate and surplus production from survey and catch data. Can. J. Fish. Aquat. Sci. 58:579-584.
Hilborn, R, D Eggers. 2001. A review of the hatchery programs for pink salmon in Prince William Sound and Kodiak Island, Alaska: response to comment. Trans. Am. Fish. Soc. 130:720-724.
Hilborn, R, JJ Maguire, AM Parma, AA Rosenberg. 2001. The precautionary approach and risk management: can they increase the probability of success in fisheries management. Can. J. Fish. Aquat. Sci. 58:99-107.
Hobday, D, AE Punt. 2001. Size-structured population modelling and risk assessment of the Victorian southern rock lobster, Jasus edwardsii, fishery. Mar. Freshwat. Res.0
Huber, HR, SJ Jeffries, RF Brown, RL DeLong, G VanBlaricom. 2001. Correcting aerial survey counts of harbor seals (Phoca vitulina richardsi) in Washington and Oregon. Mar. Mamm. Sci. 17:276-293.
Hyatt, TL, RJ Naiman. 2001. The residence time of large woody debris in the Queets River, Washington, USA. Ecol. Appl. 11:191-202.
Jameson, SC, MV Erdmann, JR Karr, KW Potts. 2001. Charting a course toward diagnostic monitoring: a continuing review of coral reef attributes and a research strategy for creating coral reef indexes of biotic integrity. Bul. Mar. Sci. 69:701-744.
Kahler, TH, P Roni, TP Quinn. 2001. Summer movement and growth of juvenile anadromous salmonids in small western Washington streams Can. J. Fish. Aquat. Sci. 58:1947-1956.
Karr, JR, E Morishita Rossano. 2001. Applying public health lessons to protect river health. Ecol. Civil Eng. 4:3-18.
Kimberling, DN, JR Karr, LS Fore. 2001. Measuring human disturbance using terrestrial invertebrates in the shrub–steppe of eastern Washington (USA). Ecol. Indic. 1:63-81.
Kocan, RM, NE Elder, JR Winton. 2001. Epidemiology of viral hemorrhagic septicemia among juvenile Pacific herring and Pacific sand lances in Puget Sound, Washington. J. Aquat. Anim. Health 13:77-85.
Kocan, RM, PK Hershberger, NE Elder. 2001. Survival of the North American strain of viral hemorrhagic septicemia virus (VHSV) in filtered seawater and seawater containing ovarian fluid, crude oil and serum-enriched culture medium. Dis. Aquat. Org. 44:75-78.
Lasta, ML, JL Valero, T Brey, C Bremec. 2001. Zygochlamys patagonica beds on the Argentinian shelf. Part II: Population dynamics of Z. patagonica. Arch. Fish. Mar. Res. 49(2):125-137.
Liermann, M, R Hilborn. 2001. Depensation, evidence, models and implications. Fish and Fisheries 2:33-58.
Loher, T, DA Armstrong, BG Stevens. 2001. Growth of juvenile red king crab (Paralithodes camtschaticus) in Bristol Bay (Alaska) elucidated from field sampling and analysis of trawl-survey data. Fish. Bull. 99:572-587.
Mackey, G, JE McLean, TP Quinn. 2001. Comparisons of run timing, spatial distribution, and length of wild and newly established hatchery populations of steelhead in Forks Creek, Washington. N. Am. J. Fish. Mgmt. 21:717-724.
Matta, MB, J Linse, C Cairncross, L Francendese, RM Kocan. 2001. Reproductive and transgenerational effects of methylmercury or aroclor 1268 on Fundulus heteroclitus. Environ. Toxicol. Chem. 20:327-335.
McDonald, PS, GC Jensen, DA Armstrong. 2001. The competitive and predatory impacts of the nonindigenous crab Carcinus maenas (L.) on early benthic phase Dungeness crab Cancer magister Dana. J. Exp. Mar. Biol. Ecol. 258:39-54.
McGraw, KA, M Castagna, LL Conquest. 2001. A study of the arkshell clams, Noetia ponderosa (Say 1822) and Anadara ovalis (Bruguiere 1789), in the oceanside lagoons and tidal creeks of Virginia. J. Shellf. Res. 20:185-195.
Mommsen, TP, TW Moon, EM Plisetskaya. 2001. Effects of arginine on pancreatic hormones and hepatic metabolism in rainbow trout. Physiol. Biochem. Zool. 74:668-678.
Moore, JD, TT Robbins, RP Hedrick, CS Friedman. 2002. Transmission of a rickettsiales-like procaryote Candidatus xenohaliotis californiensis and its role in withering syndrome of california abalone, Haliotus spp. J. Shellfish Res. 20(2):867-874.
Muir, WD, SG Smith, JG Williams, EE Hockersmith, JR Skalski. 2001. Survival estimates for migrant yearling chinook salmon and steelhead in the lower Snake and lower Columbia Rivers, 1993-1998. N. Am. J. Fish. Mgmt. 21:269-282.
Parrish, JK, M. Marvier, RT Paine. 2001. Direct and indirect effects: Interactions between bald eagles and common murres. Ecol. Appl. 11:1858-1869.
Patterson, K, R Cook, C Darby, S Gavaris, L Kell, P Lewy, B Mesnil, A Punt, V Restrepo, D Skagen, G Stefánsson. 2001. Estimating uncertainty in fish stock assessment and forecasting. Fish & Fisheries 2:125-157.
Pierce, AL, BR Beckman, KD Shearer, DA Larsen, WW Dickhoff. 2001. Effects of ration on somatotropic hormones and growth in coho salmon. Comp. Biochem. Physiol. 128:225-264.
Pietsch, TW. 2001. Charles Plumier (1646-1704) and his drawings of French and American fishes. Arch. Nat. Hist. 28:1-57.
Pietsch, TW. 2001. Charles Plumier (1646-1704) and his drawings of French and American fishes: concordance with equivalent illustrations found in the vellums of Aubriet and published works of Gautier d'Agoty, Bloch, Lacepède, Bloch and Schneider, and Cuvier and Valenciennes Arch. Nat. Hist. 28:261-268.
Pietsch, TW, K. Amaoka, DE Stevenson, EL MacDonald, BK Urbain, and JA López. 2001. Freshwater fishes of the Kuril Islands and adjacent regions. Spec. Div. 6:133-164.
Pulfrich, A, TA Branch. 2002. Population dynamics and potential yield of three species of giant winkles in the Western Cape, South Africa. S. Afr. J. Mar. Sci. 24:161-183.
Punt, AE, ADM Smith, G Cui. 2001. Review of progress in the introduction of managemen tstrategy evaluation (MSE) approaches in Australia's South East fishery. Mar. Freshwat. Res. 52:719-726.
Punt, AE, ADM Smith, G Cui. 2001. Review of progress in the introduction of managemen tstrategy evaluation (MSE) approaches in Australia's South East fishery. Mar. Freshwat. Res. 52:719-726.
Punt, AE, D Smith. 2001. Assessments of species in the Australian South East Fishery can be sensitive to the method used to convert from size- to age-composition data. Mar. Freshwat. Res. 52:683-690.
Punt, AE, DC Smith, RB Thomson, M Haddon, X He, JM Lyle. 2001. Stock assessment of the blue grenadier Macruronus novaezelandiae resource off south-eastern Australia. Mar. Freshwat. Res. 52:701-717.
Quinn, TP, GB Buck. 2001. Size- and sex-selective mortality of adult sockeye salmon: bears, gulls, and fish out of water. Trans. Am. Fish. Soc. 130:995-1005.
Quinn, TP, AE Hendry, GB Buck. 2001. Balancing natural and sexual selection in sockeye salmon: interactions between body size, reproductive opportunity and vulnerability to predation by bears. Evol. Ecol. Res. 3:917–937.
Quinn, TP, MT Kinnison, MJ Unwin. 2001. Evolution of chinook salmon (Oncorhynchus tshawytscha) populations in New Zealand: pattern, rate, and process. Genetica 112-113:493-513.
Quinn, TP, L Wetzel, S Bishop, K Overberg, DE Rogers. 2001. Influence of breeding habitat on bear predation and age at maturity and sexual dimorphism of sockeye salmon populations. Can. J. Zool. 79:1782–1793.
Rathbone, CK, JK Babbitt, FM Dong, RW Hardy. 2001. Performance of juvenile coho salmon Oncorhynchus kisutch fed diets containing meals from fish wastes, deboned fish wastes, or skin-and-bone by-product as the protein ingredient. J. World Aquacult. Soc. 32:21-39.
Rose, KA, JH Cowan Jr, KO Winemiller, RA Myers, R Hilborn. 2001. Compensatory density dependence in fish populations: importance, controversy, understanding and prognosis. Fish and Fisheries 2:293-327.
Saruwatari, T, TW Pietsch, A Shedlock, et al. 2001. Sibling analysis between female and parasitic males of a ceratioid anglerfish (Cryptopsaras couesi, Ceratiidae, Teleostei). DNA Polymorphism 9:82-85.
Sharma, R, R Hilborn. 2001. Empirical relationships between watershed characteristics and coho salmon (Oncorhynchus kisutch) smolt abundance in 14 western Washington streams. Can. J. Fish. Aquat. Sci. 58:1453-1463.
Skalski, JR, DA Coats, AK Fukuyama. 2001. Criteria for oil spill recovery: A case study of the intertidal community of Prince William Sound, Alaska, following the Exxon Valdez oil spill. J. Environ. Mgmt. 28:9-18.
Skalski, JR, J Lady, R Townsend, AE Giorgi, JR Stevenson, CM Peven, RD McDonald. 2001. Estimating in-river survival of migrating salmonid smolts using radiotelemetry. Can. J. Fish. Aquat. Sci. 58:1987-1997.
Smith, PE, JK Horne, DC Schneider. 2001. Life history strategies of anchovy, sardine, and hake in the California Current: comparison of spatial dynamics of the pre-recruit stages. ICES J. Mar. Sci. 58:1063-1071.
Smith, DC, ADM Smith, AE Punt. 2001. Approach and process for stock assessment in the South East Fishery, Australia: a perspective. Mar. Freshwat. Res. 52:671-681.
Soh, SK, DR Gunderson, DH Ito. 2001. The potential role of marine reserves in the management of shortraker rockfish (Sebastes borealis) and rougheye rockfish (S. aleutianus) in the Gulf of Alaska. Fish. Bull. 99:168-179.
Speckman, SG, G Sheffield. 2001. First record of an anomalously white killer whale near St. Lawrence Island, northern Bering Sea, Alaska. Canadian Field-Naturalist 115(3):501-502.
Steel, EA, P Guttorp, JJ Anderson, DC Caccia. 2001. Modeling juvenile migration using a simple Markov chain. J. Agric., Biol., Environ. Stat. 6:80-88.
Sugiura, SH, J Gabaudan, FM Dong, RW Hardy. 2001. Dietary microbial phytase supplementation and the utilization of phosphorus, trace minerals and protein by rainbow trout [Oncorhynchus mykiss (Walbaum)] fed soybean meal-based diets. Aquacult. Res. 32:583-592.
Utter, FM. 2001. Patterns of subspecific anthropogenic introgression in two salmonid genera. Rev. Fish Biol. Fish. 10:265-279.
Zalewski, M, JE Thorpe, RJ Naiman. 2001. Fish and riparian ecotones—a hypothesis. Ecohydrol. Hydrobiol. 1:11-24.
2002
Abookire, AA, JF Piatt, SG Speckman. 2002. A nearsurface, daytime occurrence of two mesopelagic fish species (Stenobrachius leucopsarus and Leuroglossus schmidti) in a glacial fjord. Fish. Bull. 100:376-380.
Anderson, JJ. 2002. An agent-based event drive foraging model. Nat. Resour. Model. 15:55-82.
Baldwin, CM, DA Beauchamp, CP Gubala. 2002. Seasonal and diel distribution and movement of cutthroat trout from ultrasonic telemetry. Trans. Am. Fish. Soc. 131:143-158.
Bechtold, JS, RT Edwards, RJ Naiman. 2002. Biotic versus hydrologic control over seasonal nitrate leaching in a floodplain forest. Biogeochemistry.
Bernal-Ramírez, JH, GJ Adcock, L Hauser, GR Carvalho, PJ Smith. 2002. Temporal stability of genetic population structure in the New Zealand snapper, Pagrus auratus, and relationship to coastal currents. Mar. Biol. 142:567-574.
Bertelsen, E, TW Pietsch. 2002. A new species of deep-sea anglerfish of the genus Gigantactis (Lophiiformes: Gigantactinidae) from the Western North Atlantic Ocean. Copeia 2002.:958-961.
Bodkin, JL, Be Ballachey, TA Dean, AK Fukuyama, SC Jewett, L Mcdonald, DH Monson, CE O'Clair, GR VanBlaricom. 2002. Sea otter population status and the process of recovery from the 1989 'Exxon Valdez' oil spill. Mar. Ecol. Prog. Ser. 41:237-253.
Butterworth, DS, JL Korrûbel, AE Punt. 2002. What is needed to make a simple density-dependent response population model consistent with data for eastern North Pacific gray whales? J. Cetac. Res. Mgmt. 4:63-76.
Butterworth, DS, DL Borchers, AE Punt. 2002. Dynamic response analysis for the eastern North Pacific gray whale population: an alternative approach. J. Cetac. Res. Mgmt. 4:77-83.
Butterworth, DS, AE Punt. 2002. Some suggestions for further analyses of the implications of trans-Atlantic mixing for North Atlantic bluefin tuna assessments. ICCAT 54:365-371.
Carter, SK, GR VanBlaricom. 2002. Effects of experimental harvest on red sea urchins (Strongylocentrotus franciscanus) in northern Washington. Fish. Bull. 100:662-673.
Clewey, A, RM Kocan, AA Kocan. 2002. Short communication: An intraerythrocytic parasite from the spiny dogfish, Squalus acanthias L., from the Pacific Northwest. J. Fish Dis. 25:1-4.
Cooper, A. B., J. C. Pinheiro, J.W. Unsworth and R. Hilborn. 2002. Predicting hunter success rates from elk and hunter abundance, season structure, and habitat. Wildlife Society Bulletin 30: 1068-1077.
Cui, G, AE Punt, LA Pastene, M Goto. 2002. Bayes and Empirical Bayes approaches to addressing stock structure questions using mtDNA data, with an illustrative application to North Pacific minke whales. J. Cetac. Res. Mgmt 4:123-134.
Dean, TA, JL Bodkin, AK Fukuyama, SC Jewett, DH Monson, CE O'Clair, GR VanBlaricom. 2002. Food limitation and the recovery of sea otters following the 'Exxon Valdez' oil spill. Mar. Ecol. Prog. Ser. 41:255-270.
Drake, D, RJ Naiman, JM Helfield. 2002. Reconstructing salmon abundance for rivers: an initial dendrochronological evaluation. Ecology.
Dunn, J. R. 2002a. William Francis Thompson (1888-1965), a preeminent fishery biologist of the early and mid twentieth century. Mar. Fish. Rev. 63(2):1-4.
Dunn, J. R. 2002b. William Francis Thompson (1888-1965) and his pioneering studies of the Pacific halibut, Hippoglossus stenolepis. Mar. Fish. Rev. 63(2):5-14.
Dunn, J. R. 2002c. William Francis Thompson (1888-1965) and the dawn of marine fisheries research in California. Mar. Fish. Rev. 63(2):15-24.
Ehrler, CP, JR Steinbeck, EA Laman, JB Hedgepeth, JR Skalski, DL Mayer. 2002. A process for evaluating adverse environmental impacts from cooling water system entrainment at a California power plant. The Sci. World J. 2:81-105.
Essington, TE, JF Kitchell, C Boggs, DE Schindler, RJ Olson, R Hilborn. 2002. Alternative fisheries and the predation rate of yellowfin tuna in the eastern Pacific Ocean. Ecol. Applic. 12:724-734.
Ferrero, RC, RC Hobbs, GR VanBlaricom. 2002. Indications of habitat use patterns among small cetaceans in the central North Pacific based on fisheries observer data. J. Cet. Res. Mgmt. 4:331-321.
Francis, RC. 2002. Essay: Some thoughts on sustainability and marine conservation. Fisheries 27:18-21.
Friedman, CS, W Biggs, JD Shields, RP Hedrick. 2002. Transmission of Withering Syndrome in black abalone, Haliotis cracherodii Leach. J. Shellfish Res. 21:817-824.
Gove, NE, JR Skalski, P Zager, RL Townsend. 2002. Statistical models for population reconstruction using age-at-harvest data. J. Wildl. Mgmt. 66:310-320.
Gray, A, CA Simenstad, DL Bottom, TJ Cornwell. 2002. Contrasting functional performance of juvenile salmon in recovering wetlands of the Salmon River estuary, Oregon USA. Restor. Ecol. 10:514-526.
Halpenny, CM, RM Kocan, JR Winton, JA Perry, PK Hershberger. 2002. Elevated temperature exacerbates Ichthyophonus infections in buffalo sculpin. Fish Health Newslett. 30:17-20.
Hamel, OS, JJ Anderson. 2002. Relationship between antigen concentration and bacterial load in Pacfiic salmon with bacterial kidney disease. Dis. Aquat. Org. 51:85-92.
Hauser, L, GJ Adcock, PJ Smith, JH Bernal Ramirez, GR Carvalho. 2002. Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper ( Pagrus auratus). Proc. Nat. Acad. Sci. 99:11742.
Hauser, L, GJ Adcock, PJ Smith, JH Bernal Ramirez, GR Carvalho. 2002. The effects of NPY and insulin on food intake regulation in fish. Am. Zool. 40:296-308.
Hedgepeth, JB, GE Johnson, JR Skalski, J Burczynski. 2002. Active fish sonar (AFTS) for assessing fish behavior. Acta Acoustic United with Acustica 88:739-742.
Helfield, JM, RJ Naiman. 2002. Salmon and alder as nitrogen sources to riparian forests in a boreal Alaskan watershed. Oecologia 133:573-582.
Hendry, MA, JK Wenburg, KW Myers, AP Hendry. 2002 Genetic and phenotypic variation throug the migratory season provides evidence for multiple populations of wild steelhead in the Dean River, British Columbia. Trans. Am. Fish. Soc. 131:418-434.
Hershberger, PK, K Stick, B Bui, C Carroll, B Fall, C Mork, JA Perry, E Sweeney, J Wittouck, J Winton, R Kocan. 2002. Incidence of Ichthyophonus hoferi in Puget Sound fishes and its increase with age of Pacific herring. J. Aquat. Anim. Health 14:50-56.
Hilborn, R. 2002. Marine reserves and fisheries management. Science 295:1233-1234.
Hilborn, R. 2002. The dark side of reference points. Bull. Mar. Sci. 70:403-408.
Hilborn, R, A Parma, M Maunder. 2002. Exploitation rate reference points for west coast rockfish: are they robust and are there better alternatives. N. Am. J. Fish. Mgmt. 22:365-375.
Hodgson, S, T Quinn. 2002. The timing of adult sockeye salmon migration into fresh water: adaptations by populations to prevailing thermal regimes. Can. J. Zool. 80:542-555.
Ishida, Y, T Azumaya, M Fukuwaka, N Davis. 2002. Interannual variability in stock abundance and body size of Pacific salmon in the central Bering Sea. Prog. Oceanogr. 55:223-234.
Jech, JM, JK Horne. 2002. Three-dimensional visualization of fish morphometry and acoustic backscatter. Acoust. Res. Let. Online 3:35-40.
Jenkins, C, ME Haas, A Olson, JL Ruesink. 2002. Impacts of Trampling on a Rocky Shoreline of San Juan Island, Washington, USA. Natural Areas J. 22:260-269.
Jensen, GC, PS McDonald, DA Armstrong. 2002. East meets west: competitive interactions between green crab Carinus maenas, and native and introduced shore crab Hemigrapsus spp. Mar. Ecol. Prog. Ser. 225:251-262.
Judd, NL, JR Karr, WC Griffith, EM Faustman. 2003. Challenge in defining background levels for human and ecological risk assessments. Human Ecol. Risk Assess. 9:1623-1632.
Karr, JR, DN Kimberling. 2002. A terrestrial arthropod index of biological integrity for shrub-steppe landscapes. Northw. Sci. 77:202-213.
Laidre, KL, MP Heide-Jørgensen, R Dietz. 2002. Diving behavior of narwhals (Monodon monoceros) at two coastal localities in the Canadian High Arctic. Can. J. Zool. 80:624-635.
Laidre, KL, RJ Jameson, SJ Jeffries, RC Hobbs, CE Bowlby, GR VanBlaricom. 2002. Developing carrying capacity estimates for sea otters (Enhydra lutris kenyoni) in Washington State. Wildl. Soc. Bull. Winter 2002.
Laidre, KL, RJ Jameson, SJ Jeffries, RC Hobbs, CE Bowlby, GR VanBlaricom. 2002. Estimates of carrying capacity for sea otters in Washington State. Wildl. Soc. Bull. 30:1172-1181.
Luppi, T, E Spivak, K Anger, JL Valero. 2002. Patterns and processes of Chasmagnathus granulata and Cyrtograpsus angulatus (Brachyura: Grapsidae) recruitment in Mar Chiquita Coastal Lagoon, Argentina. Est., Coast. Shelf Sci. 55:287-297.
Mode, NA, LL Conquest, DA Marker. 2002. Incorporating prior knowledge in environmental sampling: ranked set sampling and other double sampling procedures. Environmetrics 13:513-521.
Moore, JD, CA Finley, TT Robbins, CS Friedman. 2002. Withering syndrome and restoration of southern California abalone populations. CalCOFI 43:112-117.
Morley, SA, JR Karr. 2002. Assessing and restoring the health of urban streams in the Puget Sound basin. Cons. Biol. 16:1498-1509.
Myers, RA, NJ Barrowman, R Hilborn, DG Kehler. 2002. Inferring Bayesian priors with limited direct data: applications to risk analysis. N. Am. J. Fish. Mgmt. 22:351-364.
Naiman, RJ, RE Bilby, DE Schindler, and JM Helfield. 2002. Pacific salmon, nutrients, and the dynamics of freshwater and riparian ecosystems. Ecosystems 5:399-417.
Naiman, RJ, SE Bunn, C Nilsson, GE Petts, G Pinay, LC Thompson. 2002. Legitimizing fluvial ecosystems as users of water: An overview. Environ. Mgmt. 30(4):455-467
Naish KA, LK Park. 2002. Linkage relationships for 35 new microsatellite loci in chinook salmon. Oncorhynchus tshawytscha. Anim. Genet. 33:316-318.
Nowak, GM, TP Quinn. 2002. Diel and seasonal patterns of horizontal and vertical movements of telemetered cutthroat trout in Lake Washington, Washington. Trans. Am. Fish. Soc. 131:452-462.
O'Keefe, TC, RT Edwards. 2002. Evidence for hyporheic transfer and storage of marine-derived nutrients in sockeye streams in southwest Alaska. Proceedings of the Restoring Nutrients to Salmonid Ecosystems Conference. Eugene, Oregon. Am. Fish. Soc. 33:99-107.
Parrish, JK, SV Viscido, D Grünbaum. 2002. Self-organized fish schools: An Examination of emergent properties. Biol. Bull. 202:296-305.
Pierce, AL, KD Shearer, DM Baker, WW Dickhoff. 2002. An autumn profile of growth regulatory hormones in chinook salmon (Oncorhynchus tshawytscha). Fish Physiol. Biochem. 25:81-86.
Pinay, G, JC Clement, RJ Naiman. 2002. Basic principles and ecological consequences of changing water regimes on nitrogen cycling in fluvial systems. Environ. Mgmt. 30:481-491.
Pinay, G, TC O'Keefe, RT Edwards, RJ Naiman. 2002. Potential denitrification activity in the landscape of a western Alaska drainage basin. Ecosystems.
Plisetskaya, EM, VM Bondareva, JBK Leonard, JM Conlon, TP Mommsen, JT Silverstein. 2002. Measurement of channel catfish (Ictalurus punctatus) plasma in insulin in species-specific radioimmunoassay. Fish Physiol. Biochem. 25:71-80.
Punt, AE, JM Breiwick. 2002. A framework for evaluating Strike Limit Algorithms for populations reduced to small numbers. J. Cetac. Res. Mgmt 4:165-177.
Punt, AE, DS Butterworth. 2002. An examination of certain of the assumptions made in the Bayesian approach used to assess the eastern North Pacific stock of gray whales (Eschrichtius robustus). J. Cetac. Res. Mgmt. 4:99-110.
Punt, AE, ADM Smith, G Cui. 2002. Evaluation of management tools for Australia's South East fishery: 1. Modelling the South East fishery taking account of technical interactions. Mar. Freshwat. Res. 53:615-629.
Punt, AE, TI Walker, JD Prince. 2002. Assessing the management-related benefits of fixed-station fishery-independent surveys in Australia's Southern Shark Fishery. Fish. Res. 55:281-295.
Quinn, TP, JA Peterson, VF Gallucci, WK Hershberger, EL Brannon. 2002. Artificial selection and environmental change: countervailing factors affecting the timing of spawning by coho and chinook salmon. Trans. Am. Fish. Soc. 131:591-598.
Robards, MD, TP Quinn. 2002. The migratory timing of adult summer-run steelhead in the Columbia River over six decades of environmental change. Transactions of the American Fisheries Society 131:523-536.
Roegner, GC, BM Hickey, JA Newton, AL Shanks, DA Armstrong. 2002. Wind-induced plume and bloom intrusions into Willapa Bay, Washington. Limnol. Oceanogr. 47:1033-1042.
Schindler, D, TE Essington, JF Kitchell, C Boggs, R Hilborn. 2002. Sharks and tunas: fisheries impacts on predators with contrasting life histories. Ecol. Applic. 12:735-748.
Shima, M, AB Hollowed, GR VanBlaricom. 2002. Changes over time in the spatialdistribution of walleye pollock (Theragra chalcogramma) in the Gulf of Alaska, 1984-1996. Fish. Bull. 100:307-323.
Skalski, JR, D Mathur, PG Heisey. 2002. Effects of turbine operating efficiency on smolt passage survival. N. Am. J. Fish. Mgmt. 22:493-500.
Skalski, JR, JJ Millspaugh. 2002. Generic variance expressions, precision, and sampling optimization for the sex-age-kill model of population reconstruction. J. Wildl. Mgmt. 55:1308-1316.
Skalski, JR, R Townsend, J Lady, AE Giorgi JR Stevenson. 2002. Estimating route-specific passage and survival probabilities at a hydroelectric project from smolt radiotelemetry studies. Can. J. Fish. Aquat. Soc. 59: 1385-1393.
Smith, BC, CA Curran, KW Brown, JJ Cabarrus, JB Gown, JK McIntyre, EE Moreland, VL Wong, JM Grassley, CE Grue. 2003. Toxicity of four surfactants to juvenile rainbow trout: implications for use over water. Bull. Environ. Contam. Toxicol. 72:647-654.
Smith, SG, WD Muir, JG Williams, JR Skalski. 2002. Factors associated with travel time and survival of migrant yearling chinook salmon and steelhead in the Lower Snake River. N. Am. J. Fish. Mgmt. 22:385-405.
Strayer, DL, RE Beighley, LC Thompson, S Brooks, C Nilsson, G Pinay, RJ Naiman. 2002. Effects of land-cover change on stream ecosystems: roles of empirical models and scaling issues. Ecosystems.
Sun, T, GM Pigott, RP Herwig. 2002. Lipase-assisted concentration of n-3 polyunsaturated fatty acids from viscera of farmed Atlantic salmon (Salmo salar L.). J. Food Sci. 67:130-136.
Toft, J.D., J.R. Cordell, and W.C. Fields. 2002. New records of crustaceans (Amphipoda, Isopoda) in the Sacramento/San Joaquin Delta, California, and application of criteria for introduced species. J. Crust. Biol. 22(1):190-200.
Tupper, MH, K Wickstrom, R Hilborn, CM Roberts, JA Bohnsack, F Gell, JP Hawkins, R Goodridge. 2002. Marine reserves and fisheries management. Science 295:1233-1235. (in Letters)
Utter, FM. 2002. Students' angle column: Some accumulated perspectives on writing and editing. Fisheries 27:34-35.
Utter, F, J Epifanio. 2002. Marine aquaculture: genetic potentialities and pitfalls. Rev. Fish Biol. Fish. 12:59-77.
van Oosterhout, C, RE Trigg, GR Carvalho, AE Magurran, L Hauser, PW Shaw. 2002. Inbreeding depression and genetic load of sexually selected traits: How the guppy lost its spots. J. Evol. Biol. 16:273-281.
Wang, S, JJ Hard, F Utter. 2002. Genetic variation and fitness in salmonids. Cons. Genet. 3:321-333.
Wang, S, JJ Hard, F Utter. 2002. Salmonid inbreeding: a review. Rev. Fish Biol. Fish. 11:301-319.
Weetman, D, L Hauser, GR Carvalho. 2002. Reconstruction of microsatellite mutation history reveals a strong and consistent deletion bias in invasive clonal snails, Potamopyrgus antipodarum. Genetics 162:813-822.
2003
Abe, S, H Kojima, N Davis, T Nomura, S Urawa. 2003. Molecular identification of parental species in a salmonid hybrid caught in the central Bering Sea. Fish Gen. Breed. Sci. (Suisan Ikushu) 33:41-48.
Armstrong, DA, C Rooper, D Gunderson. 2003. Estuarine production of juvenile Dungeness crab (Cancer magister) and contribution to the Oregon–Washington coastal fishery. Estuaries 26:1174-1188.
Barrowman, NJ, RA Myers, R Hilborn, DG Kehler, CA Field. 2003. The variability among populations of coho salmon in the maximum reproductive rate and depensation. Ecol. Appl. 13:784-793.
Bechtold, JS, RT Edwards, RJ Naiman. 2003. Biotic versus hydrologic control over seasonal nitrate leaching in a floodplain forest. Biogeochemistry 63:53-72.
Bogatov, VV, TW Pietsch, YN Zhuravlev, SY Storozhenko, AS Lelej, VY Barkalov, SK Kholin, LA Prozorova. 2003. Patterns of origin of the terrestrial and freshwater biota of the Kuril Archipelago. Bull. Far East. Br., Russ. Acad. Sci. 3: 9-18.
Breen, PA, R Hilborn, M Maunder, S Kim. 2003. Comparing alternative harvest rules to minimise the effects of squid fishery bycatch on Hooker's sea lions (Phocarctos hookeri) in New Zealand. Can. J. Fish. Aquat. Sci. 60:527:541.
Brodeur, RD, KW Myers, JH Helle. 2003. Research conducted by the United States on the early ocean life history of Pacific salmon. N. Pac. Anadr. Fish Comm. Bull. 3:89-131.
Burger, J, TM Leschine, M Greenberg, JR Karr, M Gochfeld, CW Powers. 2003. Forum: Shifting priorities at the Department of Energy's bomb factories: protecting human and ecological health. Environ. Mgmt. 31:157-167.
Butterworth, DS, JN Ianelli, R Hilborn. 2003. A statistical model for stock assessment of southern bluefin tuna with temporal changes in selectivity. S. African J. Mar. Sci. 25:331-361.
Chaiyapechara, S, KKM Liu, FT Barrows, RW Hardy, FM Dong. 2003. Proximate composition, lipid oxidation, and sensory characteristics of fillets from rainbow trout Oncorhynchus mykiss fed diets containing 10% to 30% lipid. J. World Aquacult. Soc. 34:366-277.
Clemmesen, C, V Bühler, GR Carvalho, R Cae, G Evans, L Hauser, WF Hutchinson, WF Kjesbu, H Mempel, E Moskness, H Otteraa, H Paulsen, A Thoresen, T Svaasand. 2003. Variability in condition and growth of Atlantic cod larvae and juveniles reared in mesocosms: environmental and maternal effects. J. Fish Biol. 62:706-723.
Cooper, AB, R Hilborn, JW Unsworth. 2003. An approach for population assessment in the absence of abundance indices. Ecol. Appl. 13:814-828.
Dichmont, CM, AE Punt, A Deng, Q Dell, W Venables. 2003. Application of a weekly delay-difference model to commercial catch and effort data for tiger prawns in Australia's northern prawn fishery. Fish. Res. 65:335-350.
Dong, FM, AR Cook, RP Herwig. 2003. High hydrostatic pressure treatment of finfish to inactivate Anisakis simplex. J. Food Protect. 66:1924-1926.
Epifanio, J, G Haas, K Pratt, B Rieman, P Spruell, C Stockwell, F Utter, W Young. 2003. Integrating conservation genetic considerations into conservation planning: a case study of bull trout in the Lake Pend Oreille–lower Clark Fork River system. Fisheries 28:10-24.
Fanshawe, S, GR VanBlaricom, AA Shelly. 2003. Restored to pcarnivores as detriments to the performance of marine protected areas intended for fishery sustainability: a case study red abalones and sea otters. Cons. Biol. 17:273-283.
Flynn, L, R Hilborn, AE Punt. 2003. Identifying the spatial distribution of stocks of migrating adult sockeye salmon using age composition data. Alaska Fish. Res. Bull. 10:50-60.
Friedman, CS, CA Finley. 2003. Anthropogenic introduction of the etiological agent of withering syndrome into northern California abalone populations via conservation efforts. Can. J Fish. Aquat. Sci. 60:1424-1431.
Friedman, CS, G Trevelyan, TT Robbins, EP Mulder, R Fields. 2003. Development of an oral administration of oxytetracycline to control losses due to withering syndrome in cultured red abalone Haliotis rufescens. Aquaculture 224:1-23.
Gomez-Uchida, D, D Weetman, L Hauser, R Galleguillos, MRetamal. 2003 Allozyme and AFLP analysis of genetic population structure in the hairy edible crab Cancer setosus from the Chilean coast. J. Crustac. Biol. 23:486-494.
Gunderson, DR, M Zimmermann, DG Nichol, K Pearson. 2003. Indirect estimates of natural mortality rate for arrowtooth flounder (Atheresthes stomias) and darkblotched rockfish (Sebastes crameri). Fish. Bull. 101:175-182.
Hale, RS, JK Horne, DJ Degan, EL Conners. 2003. Using acoustics to estimate paddlefish Polyodon spathula abundance. Trans. Am. Fish. Soc. 132:746-758.
Hazen, EL, JK Horne. 2003. A method for evaluating the effects of biological factors on fish target strength. ICES J. Mar. Sci. 60:555-562.
Helfield, JM, RJ Naiman. 2003. Effects of salmon-derived nitrogen on riparian forest growth and implications for stream productivity: Reply. Ecology 84:3399-3401.
Hilborn, R. 2003. The state of the art in stock assessment: where we are and where we are going. Scientia Marina 67:15-20.
Hilborn, R, TA Branch. B Ernst, A Magnusson, CV Minte-Vera, MD Scheuerell, JL Valero. 2003. State of the world's fisheries. Ann. Rev. Environ. Resourc. 28:359-399.
Hilborn, R, TP Quinn, DE Schindler, DE Rogers. 2003. Biocomplexity and fisheries sustainability. Proc. Nat. Acad. Sci. 100:6564-6568.
Holsman, KK, DA Armstrong, DA Beauchamp, JR Ruesink. 2003. The necessity for intertidal foraging by estuarine populations of subadult Dungeness crab, Cancer magister: evidence from a bioenergetics model. Estuaries 26(4B):1155-1173.
Horne, JK. 2003. Influence of ontogeny, physiology, and behaviour on target strength of Walleye pollock (Theragra chalcogramma). ICES J. Mar. Sci. 60:1063-1074.
Karr, JR, DN Kimberling. 2003. A terrestrial arthropod index of biological integrity for shrub-steppe landscapes. Northw. Sci. 77:202-213.
Kinzey, D, T Gerrodette. 2003. Distance measurements using binoculars from ships at sea: accuracy, precision and effects of refraction. J. Cetac. Res. Mgmt. 5(2):159–171.
Kloser, RJ, JK Horne. 2003. Characterizing uncertainty in target strength measurements of a deepwater fish: orange roughy (Hoplostethus atlanticus). ICES J. Mar. Sci. 60:516-523.
Latterell, JJ, R J Naiman, BR Fransen, PA Bisson. 2003. Physical constraints on trout (Oncorhynchus spp.) distribution in the Cascade Mountains: A comparison of logged and unlogged streams. Can. J. Aquat. Fish. Sci. 60:1007-1017.
Magnusson, A, R Hilborn. 2003. Estuarine influence on survival rates of coho (Oncorhynchus kisutch) and chinook salmon (Oncorhynchus tshawytscha) released from hatcheries on the U.S. Pacific coast. Estuaries 25:1094-1103.
Mazur, MM, DA Beauchamp. 2003. A comparison of visual prey detection among species of piscivorous salmonids: effects of light and low turbidities. Environ. Biol. Fish. 67:397-405.
McLean, JE, P Bentzen, TP Quinn. 2003. Differential reproductive success of sympatric, naturally spawning hatchery and wild steelhead trout (Oncorhynchus mykiss) through the adult stage. Can. J. Fish. Aquat. Sci. 60:433-440.
Orr, AJ, JL Laake, MI Dhruv, AS Banks, RL DeLong, HR Huber. 2003 Comparison of processing pinniped scat samples using a washing machine and nested sieves. Wildl. Soc. Bull. 31:253-257.
Parenti, P, and TW Pietsch. 2003. Ostracion knorrii Walbaum, 1792, an invalid senior synonym of the striated frogfish Antennarius striatus (Shaw and Nodder, 1794). Copeia 2003:187-189.
Parrish, JK, SG Zador. 2003. Seabirds as indicators: An exploratory analysis of physical forcing in the Pacific Northwest coastal environment. Estuaries 26:1044-1057.
Pearson, KE, DR Gunderson. 2003. Reproductive biology and ecology of shortspine thornyhead rockfish, Sebastolobus alascanus, and longspine thornyhead rockfish, S. altivelis, from the northeastern Pacific Ocean. Environ. Biol. Fish. 67:117-136.
Pietsch, TW, VV Bogatov, K Amaoka, YN Zhuravlev, VY Barkalov, S Gage, H Takahashi, AS Lelej, SY Storozhenko, N Minakawa, DJ Bennett, TR Anderson, M Ôhara, LA Prozorova, Y Kuwahara, SK Kholin, M Yabe, DE Stevenson, EL MacDonald. 2003. Biodiversity and biogeography of the islands of the Kuril Archipelago. J. Biogeography 30(9):1297-1310.
Pinay, G, TC O’Keefe, RT Edwards, RJ Naiman. 2003. Potential denitrification activity in the landscape of a western Alaska drainage basin. Ecosystems 6:336-343.
Punt, AE. 2003. Evaluating the efficacy of managing West Coast groundfish resources through simulations. Fish. Bull. 101:860-873.
Punt, AE. 2003. Extending production models to include process error in the population dynamics. Can. J. Fish. Aquat. Sci. 60:1217-1228.
Punt, AE. 2003. The performance of a size-structured stock assessment method in the face of spatial heterogeneity in growth. Fish. Res. 65:391-409.
Punt, AE, DS Butterworth. 2003. An initial application of the spatial structure framework for North Atlantic bluefin developed at the September 2001 Bluefin Mixing Workshop using simple age-aggregated models. Col. Vol. Sci. Pap. ICCAT 55:1041-1054.
Quinn, TP, SM Gende, GT Ruggerone, DE Rogers. 2003. Density-dependent predation by brown bears (Ursus arctos) on sockeye salmon (Oncorhynchus nerka). Can. J. Fish. Aquat. Sci. 60:553-562.
Rasmussen, C, CO Ostberg, DR Clifton, JL Holloway, RJ Rodriguez. 2003. Identification of a genetic marker that discriminates ocean-type and stream-type chinook salmon in the Columbia River Basin. Trans. Am. Fish. Soc. 132:131-142.
Roegner, GC, DA Armstrong, BM Hickey, AL Shanks. 2003. Ocean distribution of Dungeness crab megalopae and recruitment patterns to estuaries in southern Washington State. Estuaries 26:1058-1070.
Rooper, CN, DR Gunderson, DA Armstrong. 2003. Patterns in use of estuarine habitat by juvenile English sole (Pleuronectes vetulus) in four eastern North Pacific estuaries. Estuaries 26:1142-1154.
Ruesink, JL, GC Roegner, BR Dumbauld, JA Newton, DA Armstrong. 2003. Contributions of coastal and watershed energy sources to secondary production in a northeastern Pacific estuary. Estuaries 26:1079-1093.
Ruggerone, GT, M Zimmermann, KW Myers, JL Nielsen, DE Rogers. 2003. Competition between Asian pink salmon (Oncorhynchus gorbuscha) and Alaskan sockeye salmon (O. nerka) in the North Pacific Ocean. Fish. Oceanogr. 12:209-219.
Ruzycki, JR, DA Beauchamp, D L Yule. 2003. Effects of introduced lake trout on native cutthroat trout in Yellowstone Lake. Ecol. Appl. 13:23-37.
Salinger, DH, JJ Anderson, OS Hamel. 2003. A parameter estimation routine for the vitality-based survival model. Ecol. Model. 166:287-294.
Scheuerell, MD, DE Schindler. 2003. Diel vertical migration by juvenile sockeye salmon: empirical evidence for the antipredation window. Ecology 84:1713-1720.
Schwertner, MA, KKM Liu, FT Barrows, RW Hardy, FM Dong. 2003. Performance of post-juvenile rainbow trout Oncorhynchus mykiss fed diets manufactured by different processing techniques. J. World Aquacult. Soc. 34:162-174.
Speckman, SG, JF Piatt, AM Springer. 2003. Deciphering the social structure of Marbled Murrelets from behavioral observations at sea. Waterbirds 26:266-274.
Stewart, IJ, R Hilborn, TP Quinn. 2003. Coherence of observed adult sockeye salmon abundance within and among spawning habitats in the Kvichak River watershed. Alaska Fish. Res. Bull. 10:28-41.
Stewart, IJ, TP Quinn, P Bentzen. 2003 Evidence for fine-scale natal homing among island beach spawning sockeye salmon, Oncorhynchus nerka. Environ. Biol. Fishes 67:77-85.
Strayer, DL, RE Beighley, LC Thompson, S Brooks, C Nilsson, G Pinay, RJ Naiman. 2003. Effects of land-cover change on stream ecosystems: roles of empirical models and scaling issues. Ecosystems 6:407-423.
Toft, JD, CA Simenstad, JR Cordell, LF Grimaldo. 2003. The effects of introduced water hyacinth on habitat structure, invertebrate assemblages, and fish diets. Estuaries 26:746-758.
Towler, RL, JM Jech, JK Horne. 2003. Visualizing fish movement, behaviour, and acoustic backscatter. Aquat. Liv. Resourc. 16:277-282.
Unwin, MJ, MT Kinnison, NC Boustead, TP Quinn. 2003 Genetic control over survival in Pacific salmon (Oncorhynchus spp.): experimental evidence between and within populations of New Zealand chinook salmon (O. tshawytscha) Can. J. Fish. Aquat. Sci. 60:1-11.
Vollestad, LA, TP Quinn. 2003. Trade-off between growth rate and aggression in juvenile coho salmon, Oncorhynchus kisutch. Anim. Behav. 66:561-568.
Watters, GM, RJ Olson, RC Francis, PC Fiedler, JJ Polovina, SM Reilly, KY Aydin, CH Boggs, TE Essington, CJ Walters, JF Kitchell. 2003. Physical forcing and the dynamics of the pelagic ecosystem in the eastern tropical Pacific: simulations with ENSO-scale and global-warming climate drivers. Can. J. Fish. Aquat. Sci. 60: 1161-1175.
2004
Au, WL, JKB Ford, JK Horne, KA Allman. 2004. Echolocation signals of free-ranging killer whales (Orcinus orca) and modeling of foraging for chinook salmon (Oncorhynchus tshawytscha). J. Acoust. Soc. Am. 115:901-909.
Beauchamp, DA, CJ Sergeant, MM Mazur, JM Scheuerell, DE Schindler, MD Scheuerell, KL Fresh, DE Seiler, TP Quinn. 2004. Spatial–temporal dynamics of early feeding demand and food supply for sockeye salmon Fry in Lake Washington. Trans. Am. Fish. Soc. 133:1014-1032.
Beschta, RL, JJ Rhodes, JB Kauffman, RE Gresswell, GW Minshall, JR Karr, DA Perry, FR Hauer, CA Frissell. 2004. Postfire management on forested public lands on the western United States. Cons. Biol. 18:957-967.
Boatright, C, T Quinn, R Hilborn. 2004. Timing of adult migration and stock structure for sockeye salmon in Bear Lake, Alaska. Trans. Am. Fish. Soc. 133:911-921.
Booth, DB, JR Karr, S Schauman, CP Konrad, SA Morley, MG Laron, SJ Burges. 2004. Reviving urban streams: land use, hydrology, biology, and human behavior. J. Am. Wat. Res. Assoc. 40:1351-1364.
Branch, TA, K Matsuoka, T Miyashita. 2004. Evidence for increases in Antarctic blue whales based on Bayesian modelling. Mar. Mamm. Sci. 20:726-754.
Brannon, EL, MS Powell, TP Quinn, A Talbot. 2004. Population structure of Columbia River Basin chinook salmon and steelhead trout. Rev. Fish. Sci. 12:99-232.
Browman, HI, PM Cury, R Hilborn, S Jennings, HK Lotze, PM Mace, S Murawski, D Pauly, M Sissenwine, KI Stergiou, D Zeller. 2004. Perspectives on ecosystem-based approaches to the management of marine resources Mar. Ecol. Prog. Ser. 274:269-303.
Carlson, SM, HB Rich, Jr, TP Quinn. 2004. Reproductive life-span and sources of mortality for alternative male life-history strategies in sockeye salmon, Oncorhynchus nerka. Can. J. Zool. 82:1878–1885.
Cope, JM. 2004. Population genetics and phylogeography of the blue rockfish (Sebastes mystinus) from Washington to California. Can. J. Fish. Aquat. Sci. 61:332-234.
Curran CA, Grassley JM, Grue CE. 2004 Toxicity of R-11® surfactant to juvenile rainbow trout: Does size matter? Bull. Environ. Contam. Toxicol. 72:401-408
Décamps, H, G Pinay, RJ Naiman, and 11 others. 2004. Riparian zones: where biogeochemistry meets biodiversity in management practice. Polish J. Ecol. 52:3-18.
Elliott, SR, RJ Naiman, PA Bisson. 2004. The effect of riparian disturbance on physicochemical parameters of seston at summer baseflow. Northw. Sci. 78:150-157.
Essington, TE. 2004. Getting the right answer from the wrong model: evaluating the sensitivity of multispecies fisheries advice to uncertain species interactions. Bull. Mar. Sci. 74:563-581.
Essington, TE, S Hansson. 2004. Predator-dependent functional response and interaction strengths in a natural food web. Can. J. Fish. Aquat. Sci. 61:2227-2236.
Estes, RM, CS Friedman, RA Elston, RP Herwig. 2004. Pathogenicity testing of shellfish hatchery bacterial isolates on Pacific oyster Crassostrea gigas larvae. Dis. Aquat. Org. 58:223-230.
Flynn, L, R Hilborn. 2004. Test fishery indices for sockeye salmon (Oncorhynchus nerka) as affected by age composition and environmental variables. Can. J. Fish. Aquat. Sci. 61:80-92.
Garono, RJ, CA Simenstad, R Robinson, H Ripley. 2004. Using high spatial resolution hyperspectral imagery to map intertidal habitat structure in Hood Canal, Washington, U.S.A. Can. J. Remote Sens. 30:54-63.
Gauthier, S, JK Horne. 2004. Acoustic characteristics of forage fish species in the Gulf of Alaska and Bering Sea. Can. J. Aquat. Fish. Sci. 61:1839-1850.
Gauthier, S, JK Horne. 2004. Potential acoustic discrimination of boreal fish assemblages. ICES J. Mar. Sci. 61:836-845.
Gende, SM, TP Quinn, R Hilborn, AP Hendry, B Dickerson. 2004. Brown bears selectively kill salmon with higher energy content but only in habitats that facilitate choice. Oikos 104:518-528.
Gende, SM, TP Quinn, MF. Willson, R Heintz, TM Scott. 2004. Magnitude and fate of salmon-derived nutrients and energy in a coastal stream ecosystem. J Freshwat Ecol 19:149-160.
Gerber, LR, KE Buenau, GR VanBlaricom. 2004. Density dependence and risk of extinction in a small population of sea otters. Biodivers. Cons. 13:2741-2757.
Grünbaum, D, SV Viscido, JK Parrish. 2005. Extracting interactive control algorithms from group dynamics of schooling fish. Cooperative Control Lecture Notes in Control and Information Sciences 309:103-117.
Halpenny, CM, RM Kocan, PK Hershberger. 2004. Prevalence of the parasitic copepod Haemobaphes intermedius on juvenile buffalo sculpins from Washington State. J. Aquat. Anim. Health 16(3):161-163.
Halver, JE, SM Felton, R Zbanyszek. 2004. Carcass selenium loss as an indicator of stress in barge transported chinook salmon (Oncorhynchus tshawytscha Walbaum) smolts. Aquacult. Res. 35:1099-1103.
Hamel, NJ, JK Parrish, LL Conquest. 2004. Effects of tagging on behavior, provisioning, and reproduction in the common murre (Uria aalge), a diving seabird. The Auk 121:1161-1171.
Hazen, EL, JK Horne. 2004. Comparing modeled and measured target strength variability of walleye pollock, Theragra chalcogramma. ICES J. Mar. Sci. 61:363-377.
Helser, TE, AE Punt, RD Methot. 2004. A generlized linear mixed model analysis of a multi-vessel fishery resource survey. Fish. Res. 70:251-264.
Hilborn, R. 2004. Ecosystem-based fisheries management: the carrot or the stick? In HI Browman, KI Stergiou (coordinators), Perspectives on ecosystem-based approaches to the management of marine resources. Mar. Ecol. Prog. Ser. 274:275-278.
Hilborn, R., AE Punt, J Orensanz. 2004. Beyond band-aids in fisheries management: fixing world fisheries. Bull. Mar. Sci. 74:493-507.
Hilborn, R, K Stokes, J-J Maguire, T Smith, LW Botsford, M Mangelf, J Orensanz, A Parma, J Rice, J Bell, KL Cochrane, S Garcia, SJ Hall, GP Kirkwood, K Sainsbury, G Stefansson, C Walters. 2004. When can marine reserves improve fisheries management? Ocean Coast. Mgmt. 47:197-205.
Jensen, GC. 2004. Status of Eualus pusiolus in the northeastern Pacific, with a description of a new species of Eualus (Decapoda: Hippolytidae). J. Crust. Biol. 24:463-469.
Jensen, GC, DA Armstrong. 2004. The occurrence of the Japanese mitten crab, Eriocheir japonica (de Haan), on the west coast of North America. Cal. Fish Game 90:94-99.
Jensen, PC, P Bentzen. 2004. Isolation and inheritance of microsatellite loci in the Dungeness crab (Brachyura: Cancridae: Cancer magister). Genome 47:325-331.
Johnson, GE, JB Hedgepeth, JR Skalski, AE Giorgi. 2004. A Markov chain analysis of fish movements to determine entrainment zones. Fish. Res. 69(3):349-358.
Kaeriyama, M Nakamura, R Edpalina, JR Bower, H Yamaguchi, RV Walker, KW Myers. 2004. Change in feeding ecology and trophic dynamics of Pacific salmon (Oncorhynchus spp.) in the central Gulf of alaska in relation to climate events. Fish. Oceanogr. 13:197-207.
Karr, J.R. 2004. Beyond definitions: maintaining biological integrity, diversity, and environmental health in national wildlife refuges. Nat. Res. J. 44:1067-1092.
Karr, JR, JJ Rhodes, GW Minshall, FR Hauer, RL Beschta, CA Frissell, DA Perry. 2004. The effects of postfire salvage logging on aquatic ecosystems in the American west. BioScience 54:1029-1033.
Karr, JR, CO Yoder. 2004. Biological assessment and criteria improve total maximum daily load decision making. J. Environ. Engineer. 130:594-604.
Kitajka, K, AJ Sinclair, RS Weisinger, HS Weisinger, M Mathai, AP Jayasooriya, JE Halver, LG Puskas. 2004. Effects of dietary omega-3 polyunsatuated fatty acids on brain gene expression. Proc. Nat. Acad. Sci. 101:10931-10936.
Kitchell, JF, IC Kaplan, SP Cox, SJD Martell, TE Essington, CH Boggs, CJ Walters. 2004. Ecological and economic components of alternative fishing methods to reduce by-catch of marlin in a tropical pelagic ecosystem. Bull. Mar. Sci. 74:607-619.
Kocan, R, P Hershberger, J Winton. 2004. Ichthyophoniasis: an emerging disease of chinook salmon in the Yukon River. J. Aquat. Anim. Health 16(2):58-72.
Laidre, KL, MP Heide-Jørgensen, ML Logsdon, RC Hobbs, R Dietz, GR VanBlaricom. 2004. Fractal analysis of narwhal space use patterns. Zoology 107:3-11.
Little, LR, S Kuikka, AE Punt, F Pantus, CR Davies, BD Mapstone. 2004. Information flow among fishing vessels modelled using a Bayesian network. Environm. Model. Soft. 19:27-34.
Litzow, MA, JF Piatt, AA Abookire, SG Speckman, ML Arimitsu, JD Figurski. 2004. Spatiotemporal predictability of schooling and nonschooling prey of Pigeon Guillemots. Condor 106:410-414.
Lubetkin, SC, CA Simenstad. 2004. Two multi-source mixing models using conservative tracers to estimate food web sources and pathways. J. Appl. Ecol. 41: 996-1008.
Luengen, AC, CS Friedman, PT Raimondi, AR Flegal. 2004. Evaluation of mussel immune responses as indicators of contamination in San Francisco Bay. Mar. Environ. Res. 57:197-212.
Maunder, MN, AE Punt. 2004. Standardizing catch and effort data: a review of recent approaches. Fish. Res. 70:141-159.
McLean, JE, P Bentzen, TP Quinn. 2004. Differential reproductive success of sympatric, naturally spawning hatchery and wild steelhead trout (Oncorhynchus mykiss). Environ. Biol. Fish. 69:359-369.
Miller, KM, A Schulze, MK Purcell, JR Winton. 2004. Major histocompatibility complex loci are associated with susceptibility of Atlantic salmon to infectious hematopoietic necrosis virus. Environ. Biol. Fishes 69:307-316.
Moore, JW, DE Schindler, MD Scheuerell. 2004. Disturbance of freshwater habitats by anadromous salmon in Alaska. Oecologia 139:298-308.
Moore, JW, DE Schindler. 2004. Nutrient export from freshwater ecosystems by anadromous sockeye salmon (Oncorhynchus nerka). Can. J. Fish. Aquat. Sci. 61:1582-1589.
Mork, C, P Hershberger, R Kocan, W Batts, J Winton. 2004. Isolation and characterization of a rhabdovirus from starry flounder (Platichthys stellatus) collected from the northern portion of Puget Sound, Washington, USA. J. Gen. Virol. 85:495-505.
Orensanz, JM, CM Hand, AM Parma, J Valero, R Hilborn. 2004. Precaution in the harvest of Methuselah's clams—the difficulty of getting timely feedback from slowpaced dynamics. Can. J. Fish. Aquat. Sci. 61:1355-1372.
Orr, AJ, AS Banks, S Mellman, HR Huber, RL DeLong. 2004. Examination of the foraging habits of Pacific harbor seal (Phoca vitulina richardsi) to describe their use of the Umpqua River, Oregon, and their predation on salmonids. Fish Bull 102:108-117.
Payne LX, DE Schindler, JK Parrish, SA Temple. 2005. Quantifying spatial pattern with heterogeneity indices. Ecol. Applic. 15:507-520.
Perry, JA, RM Kocan, JR Winton, PK Hershberger. 2004. High corticosteroid doses suppress resistance to Ichthyophonus in Starry Flounder. J. Aquat. Anim. Health 16:45-49.
Pietsch, TW. 2004. A new species of the anglerfish genus Lophiocharon Whitley (Lophiiformes: Antennariidae) from Australian waters. Rec. Aust. Mus. 56:159-162.
Pietsch, TW. 2004. Revision of the deep-sea anglerfish genus Phyllorhinichthys Pietsch (Lophiiformes: Ceratioidei: Oneirodidae), with the description of a new species from the Atlantic Ocean. Copeia 2004:797-803.
Pietsch, TW, H-C Ho, H-M Hong. 2004. Revision of the deep-sea anglerfish genus Bufoceratias Whitley (Lophiiformes: Ceratioidei: Diceratiidae), with description of a new species from the Indo-West Pacific Ocean. Copeia 2004:98-107.
Pietsch, TW, VE Kharin. 2004. Pietschichthys horridus Kharin, 1989, a junior synonym of Dermatias platynogaster Smith and Radcliffe, in Radcliffe, 1912 (Lophiiformes: Oneirodidae), with a revised key to oneirodid genera. Copeia 2004:122-127.
Perry, JA, RM Kocan, JR Winton, PK Hershberger. 2004. High doses of corticosteroid suppress resistance to Ichthyophonus in starry flounder. J. Aquat. Anim. Health 16(1):45-49.
Pollock, MM, GR Pess, TJ Beechie, DR Montgomery. 2004. The importance of beaver ponds to coho salmon production in the Stillaguamish River Basin, Washington, USA. N. Am. J. Fish. Mgmt. 24:749-760.
Punt, AE, C Allison, G Fay. 2004. An examination of assessment models for the eastern North Pacific gray whale based on inertial dynamics. J. Cetac. Res. Mgmt. 6:121-132.
Punt, AE, RD Methot. 2004. Effects of marine protected areas on the assessment of marine fisheries. Am. Fish. Soc. Symp. 42:133-154.
Purcell, MK, G Kurath, K Garver, RP Herwig, JR Winton. 2004. Quantitative expression profiling of immune response genes in rainbow trout during IHNV infection or following vaccination with a DNA vaccine against IHNV. Fish Shellf. Immunol. 17:447-462.
Rooper, CN, DR Gunderson, DA Armstrong. 2004. Concentration of juvenile English sole in nursery estuaries on the Pacific Northwest coast and resulting recruitment patterns in the adult stock. Estuaries. 27:102-111.
Shedlock, AM, TW Pietsch, MG Haygood, P Bentzen, M Hasegawa. 2004. Molecular systematics and life history evolution of anglerfishes (Teleostei: Lophiiformes): Evidence from mitochondrial DNA. Steenstrupia Copenhagen 28(2):129-144.
Skalski, JR, JJ Millspaugh. 2004. Generic variance expressions, precision, and sampling optimization fo the sex-age-kill model of population reconstruction. J. Wildl. Mgmt. 66:1308-1316.
Smith, JL, KD Hyrenbach. 2004. Galapagos Islands to British Columbias: seabird communities along a 9000 km transect from the tropical to the subarctic eastern Pacific Ocean. Mar. Ornithol. 31:155-166.
Speckman, SG, JF Piatt, AM Springer. 2004. Small boats disturb fish-holding Marbled Murrelets. Northw. Natur. 85:32-34.
Stamatiou, L, GC Jensen. 2004. Heptacarpus littoralis Butler a synonym of Heptacarpus sitchensis (Brandt) (Crustacea: Decapoda: Hippolytidae). Zootaxa 461:1-4.
Steel, EA, BE Feist, DW Jensen, GR Pess, MB Sheer, JB Brauner, RE Bilby. 2004. Landscape models to understand steelhead (Oncorhynchus mykiss) distribution and help prioritize barrier removals in the Willamette basin, Oregon, USA. Can. J. Fish. Aquat. Sci. 61:999-1011.
Stewart, IJ, SM Carlson, CP Boatright, GB Buck, TP Quinn. 2004. Site fidelity of spawning sockeye salmon (Oncorhynchus nerka W.) in the presence and absence of olfactory cues. Ecol. Freshwat. Fish 13:104–110.
Strom, A, RC Francis, NJ Mantua, EL Miles, DL Peterson. 2004. North Pacific climate recorded in growth rings of geoduck clams: A new tool for paleoenvironmental reconstruction. Geophys. Res. Let. 31:L06206:1-4.
Tamayo, CE Grue. 2004. Developmental Performance of the Milfoil Weevil (Coleoptera: Curculionidae) on Watermilfoils in Washington State. Environ. Entomol. 33:872-880.
Tamayo, M, CE Grue, K Hamel. 2004. Densities of the milfoil weevil (Euhrychiopsis lecontei) on native nad exotic watermilfoils. J. Freshwat. Ecol. 19:203-211.
Timm, RK, RC Wissmar, JW Small, TM Leschine, G Lucchetti. 2004. A screening procedure for prioritizing riparian management. Environ. Mgmt. 33:151-161.
Vadopalas, B, LL LeClair, P Bentzen. 2004. Microsatellite and allozyme analyses reveal few genetic differences among spatially distinct aggregations of geoduck clams (Panopea abrupta, Conrad 1849). J. Shellfish Res. 23:693-706.
Vadopalas, B, JP Davis. 2004. Optimal chemical triploid induction in geoduck clams, Panopea abrupta, by 6-dimethylaminopurine. Aquaculture 230:29-40.
Valero JL, C Hand, JM Orensanz, AM Parma, D Armstrong, R Hilborn. 2004. Geoduck (Panopea abrupta) recruitment in the Pacific Northwest—long-term changes in relation to climate. CalCOFI Rep. 45:80-86.
Vander Haegen, GE, CE Ashbrook, KW Yi, JF Dixon. 2004. Survival of spring chinook salmon captured and released in a selective commercial fishery using gill nets and tangle nets Fish. Res. 68:123-133.
Viscido, SV, JK Parrish, D Grünbaum. 2004. Individual behavior and emergent properties of fish schools: a comparison of observation and theory. Mar. Ecol. Prog. Ser. 273:239-249.
Visser, EP, PS McDonald, DA Armstrong. 2004. The impact of yellow shore crabs, Hemigrapsus oregonensis, on early benthic phase dungeness crabs, Cancer magister, in intertidal oyster shell mitigation habitat. Estuaries 27:699-715.
Vøllestad, LA, J Peterson, TP Quinn. 2004. Effects of freshwater and marine growth rates on early maturity in male coho and chinook salmon. Trans. Am. Fish. Soc. 133:495-503.
Vörösmarty, C, D Lettenmaier, C Leveque, M Meybeck, C Pahl-Wostl, J Alcamo, W Cosgrove, H Grassl, H Hoff, P Kabat, F Lansigan, R Lawford, R Naiman. 2004. Humans transforming the global water system. Eos, Trans., Am. Geophys. Un. 85:509-514.
Winder, M, DE Schindler. 2004. Climate change uncouples trophic interactions in an aquatic ecosystem. Ecology 85:2100-2106.
Winder, M, DE Schindler. 2004. Climatic effects on the phenology of lake processes. Glob. Change Biol. 10:1844-1856.
Wissmar, RC, N Beer, RK Timm. 2004. Spatially explicit estimates of erosion-risk indices and variable riparian buffer widths in watersheds. Aquat. Sci. 66:446–455.
Wissmar, RC, SD Craig. 2004. Factors affecting habitat selection by a small spawning charr population, bull trout, Salvelinus confluentus: Implications for recovery of an endangered species. Fish. Mgmt. Ecol. 11:23-31.
Xiao, Y, AE Punt, RB Millar, TJ Quinn II. 2004. Preface: Models in fisheries research: GLMs, GAMS and GLMMs. Fish. Res. 70:137-139.
Yabe, M., and TW. Pietsch. 2003. A new sculpin, Microcottus matuaensis, from the central Kuril Archipelago (Scorpaeniformes: Cottidae). Ichthyol. Res. 50:276-280.
Zerbini, AN, A Andriolo, JM daRocha, PC Simões-Lopes, S Siciliano, JL Pizzorno, JM Waite, DP DeMaster, GR VanBlaricom. 2004. Winter distribution and abundance of humpback whales (Megaptera novaeangliae) off northeastern Brazil. J. Cetac. Res. Mgmt. 6:101-107.
2005
Allen, RB, R Hilborn, AA Rosenberg. 2005. Fisheries management. Issues Sci. Tech. 21:10-12.
Anderson, JJ, E Gurarie, RW Zabel. 2005. Mean free-path length theory of predator–prey interactions: Application to juvenile salmon migration. Ecol. Model. 186:196–211.
Armstrong, JL, JL Boldt, AD Cross, JH Moss, ND Davis, KW Myers, RV Walker, DA Beauchamp, LJ Haldorson. 2005. Distribution, size, and interannual, seasonal, and diel food habits of northern Gulf of Alaska juvenile pink salmon, Oncorhynchus gorbuscha. In HP Batchelder, EJ Lessard, PT Strub, TJ Weingartner (eds), Special Issue: U.S. GLOBEC Biological and Physical Studies of Plankton, Fish and Higher Trophic Level Production, Distribution, and Variability in the Northeast Pacific. Deep Sea Research II 52(1-2):247-265.
Aydin, KY, GA McFarlane, JR King, BA Megrey, KW Myers. 2005. Linking oceanic food webs to coastal production and growth rates of Pacific salmon (Oncorhynchus spp.), using models on three scales. Deep-Sea Research II 52:757-780.
Baldwin, ZH. 2005. A new species of bullhead shark, Genus Heterodontus (Heterodontiformes: Heterodontidae), from Oman. Copeia 2005:262-264.
Balian, EV, RJ Naiman. 2005. Abundance and production of riparian trees in the lowland floodplain of the Queets River, Washington. Ecosystems 8:841-861.
Bartz, KK, RJ Naiman. 2005. Effects of salmon-borne nutrients on riparian soils and vegetation in Southwest Alaska. Ecosystems 8:529-545.
Bradford, AL, DW Weller. 2005. Spotted seal haul-out patterns in a coastal lagoon on Sakhalin Island, Russia. Mammal Study 30:145-149.
Branch, TA, R Hilborn, E Bogazzi. 2005. Escaping the tyranny of the grid: a more realistic way of defining fishing opportunities. Can. J. Fish. Aquat. Sci. 62:631-642.
Buchanan, RA, LL Conquest, J-Y Courbois. 2005. A cost analysis of ranked set sampling to estimate a population mean. Environmetrics 16:235-256.
Cooper, DW, KE Pearson, DR Gunderson. 2005. Complementary use of stereological and gravimetric fecundity techniques for shortspine thornyhead rockfish (Sebastolobus alascanus) and longspine thornyhead rockfish (S. altivelis) from the northeastern Pacific. Fish. Bull. 103:15-22.
Cross, AD, DA Beauchamp, JH Moss, KW Myers, JL Armstrong, JL Boldt, ND Davis, LJ Haldorson, RV Walker. 2005. Modeling bioenergetics of juvenile pink salmon in Prince William Sound and the coastal Gulf of Alaska. Deep Sea Res. II 52:347-370.
Dean, AF, SM Bollens, C Simenstad, J Cordell. 2005. Marshes as sources or sinks of an estuarine mysid: demographic patterns and tidal flux of Neomysis kadiakensis at China Camp marsh, San Francisco estuary. Est. Coast. Shelf Sci. 63:1-11.
de Valpine, P, R Hilborn. 2005. State-space likelihoods for nonlinear fisheries time-series. Can. J. Fish. Aquat. Sci. 62:1937-1952.
Dickerson, BR, KW Brinck, MF Willson, P Bentzen, TP Quinn. 2005. Relative importance of salmon body size and arrival time at breeding grounds to reproductive success. Ecology 86:347-352.
Duffy, EJ, DA Beauchamp, RM Buckley. 2005. Early marine life history of juvenile Pacific salmon in two regions of Puget Sound. Est. Coast. Shelf Sci. 64:94-107.
Dunn, JR. 2005. John Nathan Cobb (1868–1930): Founding director of the College of Fisheries, University of Washington, Seattle. Mar. Fish. Rev. 65:1-24.
Dunn, JR, TW Pietsch. 2005. Historical Perspectives: Daniel Morris Cohen. Copeia 2005(3):693-700.
Friedman, CS, HM Brown, TW Ewing, FJ Griffin, GN Cherr. 2005. Pilot study of the Olympia oyster Ostrea conchaphila in the San Francisco Bay estuary: description and distribution of diseases. Dis. Aquat. Org. 65:1-8.
Friedman, CS, RM Estes, NA Stokes, CA Burge, JS Hargove, BJ Barber, RA Elston, EM Burreson, KS Reece. 2005. Herpes virus in juvenile Pacific oysters Crassotrea gigas from Tomales Bay, California, coincides with summer mortality episodes. Dis. Aquat. Org. 63:33-41.
Fulton, EA, ADM Smith, AE Punt. 2005. Which ecological indicators can robustly detect effects of fishing? ICES J. Mar. Sci. 62:540-551.
Gutiérrez, NL, A Defeo. 2005. Spatial patterns in population dynamics of the scallop Psychrochlamys patagonica at the northern edge of its range. J. Shellfish Res. 24:877-882.
Halos, D, SA Hart, P Hershberger, R Kocan. 2005. Ichthyophonus in Puget Sound Rockfish from the San Juan Islands Archipelago and Puget Sound, Washington, USA. J. Aquat. Anim. Hlth. 17:222-227.
Hilborn, R, JM Orensanz, AM Parma. 2005. Institutions, incentives and the future of fisheries. Phil. Trans. R. Soc. B 360:47–57.
Hilborn, R, JK Parrish, K Litle. 2005. Fishing Rights or Fishing Wrongs?. Rev. Fish Biol. Fish. 15:191-198.
Hobday, D, AE Punt, DC Smith. 2005. Modelling the effects of Marine Protected Areas (MPAs) on the southern rock lobster (Jasus edwardsii) fishery of Victoria, Australia. New Zeal. J. Mar. Freshwat. Res. 39:675-686.
Hulbert, L. Alex DaSilva, V. F. Gallucci, Joel Rice. 2005. Seasonal foraging movements and migratory patterns of female Lamna ditropis, the salmon shark, tagged in PWS, Alaska. J. Fish Biol. 67:490-509.
Hunt, GL, Jr, GS Drew, J Jahncke, JF Piatt. 2005. Prey consumption and energy transfer by marine birds in the Gulf of Alaska. Deep-Sea Res. II 52:781-797.
Hunt, GL, Jr, BA Megrey. 2005. Comparison of the biophysical and trophic characteristics of the Bering and Barents Seas. ICES J. Mar. Sci. 62:1245-1255.
Hyun, S-Y, R Hilborn, JJ Anderson, B Ernst. 2005. A statistical model for in-season forecasts of sockeye salmon (Oncorhynchus nerka) returns to the Bristol Bay districts of Alaska. Can. J. Fish. Aquat. Sci. 62:1665-1680.
Ishimura, G, AE Punt, DD Huppert. 2005. Management of fluctuating fish stocks: the case of Pacific whiting. Fish. Res. 73:201-216.
Jahncke, J, KD Hyrenbach, CL Baduini, KO Coyle, GL Hunt, Jr 2005. Distribution of foraging shearwaters with respect to the inner front of the southeastern Bering Sea. Mar. Ecol. Prog. Ser. 305:219-233.
Jayasooriya, AP, ML Ackland, ML Mathai, AJ Sinclair, HS Weisinger, RS Weisinger, JE Halver, K Kitajka, LG Puskas. 2005. Perinatal ω-3 polyunsaturated fatty acid supply modifies brain zinc homeostasis during adulthood. Proc. Nat. Acad. Sci. 102:7133-7138.
Jensen, GC. 2005. A unique feeding method by a teleost fish, the fourhorn poache Hypsagonus quadricornis (Agonidae). Biol. Bull. 209:165-167.
Kenaley, CP, KE Hartel. 2005. A revision of Atlantic species of Photostomias (Teleostei: Stomiidae: Malacosteinae), with a description of a new species. Ichthyol. Res 52:251-263.
Lessard, RB, SJD Martell, CJ Walters, TE Essington, JF Kitchell. 2005. Synthesis: Should ecosystem management involve active control of species abundances? Ecol. Soc. 10. (Online version)
Logerwell, EA, K Aydin, S Barbeaux, E Brown, ME Conners, S Lowe, JW Orr, I Ortiz, R Reuter, P Spencer. 2005. Geographic patterns in the demersal ichthyofauna of the Aleutian Islands. Fish. Oceanogr. 14(Suppl. 1):1-20.
Loher, T, DA Armstrong. 2005. Historical changes in the abundance and distribution of ovigerous red king crabs (Paralithodes camtschaticus) in Bristol Bay (Alaska), and potential relationship with bottom temperature. Fish. Oceanogr. 14:292-306.
Little, LR, ADM Smith, AD McDonald, AE Punt, BD Mapstone, F Pantus, CR Davies. 2005. Effects of size and fragmentation of marine reserves and fisher infringement on the catch and biomass of coral trout, Plectropomus leopardus, on the Great Barrier Reef, Australia. Fish. Mgmt. Ecol. 12:177-188.
Martell, SJD, TE Essington, B Lessard, JF Kitchell, CJ Walters, CH Boggs. 2005. Interactions of productivity, predation risk, and fishing effort in the efficacy of marine protected areas for the central Pacific. Can. J. Fish. Aquat. Sci. 62:1320-1336.
McLean, JE, P Bentzen, TP Quinn. 2005. Nonrandom, size- and timing-biased breeding in a hatchery population of steelhead trout. Cons. Biol. 19:446-454.
McClelland, EK, JM Myers, JJ Hard, LK Park, KA Naish. 2005. Two generations of outbreeding in coho salmon (Oncorhynchus kisutch): effects on size and growth. Can. J. Fish. Aquat. Sci. 62:2538-2547.
Minte-Vera, CV, TA Branch, IJ Stewart, MW Dorn. 2005. Practical presentation of meta-analysis results: avoiding the double use of data in future applications. Can. J. Fish. Aquat. Sci. 62: 925-929.
Moreno IB, AN Zerbini, D Danilewicz, MC de Oliveira Santos, PC Simões-Lopes, J Lailson-Brito, Jr, AF Azevedo. 2005. Distribution and habitat characteristics of dolphins of the genus Stenella (Cetacea: Delphinidae) in the southwest Atlantic Ocean. Mar. Ecol. Prog. Ser. 300:229-240.
Moss, JH, DA Beauchamp, AD Cross, KW Myers, EV Farley, JR, JM Murphy, JH Helle. 2005. Evidence for size-selective mortality after the first summer of ocean growth by pink salmon. Trans. Am. Fish. Soc. 134:1313-1322.
Mullineaux, LS, SW Mills, AK Sweetman, AH Beaudreau, A Metaxas, HL Hunt. 2005. Vertical, lateral, and temporal structure in larval distributions at hydrothermal vents. Mar. Ecol. Prog. Ser. 293:1-16.
Naiman, RJ, JJ Latterell. 2005. Principles for linking fish habitat to fisheries management and conservation. J. Fish Biol. 67:166-185.
Nakamura, I, JC Evans, M Kusakabe, Y Nagahama, G Young. 2005. Changes in steroidogenic enzyme and steroidogenic acute regulatory protein messenger RNAs in ovarian follicles during ovarian development of rainbow trout (Oncorhynchus mykiss). Gen. Comp. Endocrinol. 144:224-231.
Newell, JC, TP Quinn. 2005. Behavioral thermoregulation by maturing adult sockeye salmon (Oncorhynchus nerka) in a stratified lake prior to spawning. Can. J. Zool. 83:1232–1239.
Orth, K, JW Day, DF Boesch, EJ Clairain, WJ Mitsch, L Shabman, C Simenstad, B Streever, C Watson, J Wells, D Whigham. 2005. Lessons learned: An assessment of the effectiveness of a National Technical Review Committee for oversight of the plan for the restoration of the Mississippi Delta. Ecol. Eng. 25:153-167.
Packer, C, R Hilborn, A Mosser, B Kissui, M Borner, G Hopcraft, J Wilmshurst, S Mduma, ARE Sinclair. 2005. Ecological change, group territoriality, and population dynamics in Serengeti lions. Science 307:390-393.
Palen, WJ, CE Williamson, AA Clauser, DE Schindler. 2005. Impact of UV-B exposure on amphibian embryos; linking species physiology to oviposition behavior. Proc. Royal Soc. London 272:1227-1234.
Pettit, NE, RJ Naiman. 2005. Flood-deposited wood debris and its contribution to heterogeneity and regeneration in a semi-arid riparian landscape. Oecologia145:434-444.
Pettit, NE, RJ Naiman, KH Rogers, JE Little. 2005. Post flooding distribution and characteristics of large woody debris piles along the semi-arid Sabie River, South Africa. River Research and Applications 21:27-38.
Pierce, AL, H Fukada, WW Dickhoff. 2005. Metabolic hormones modulate the effect of growth hormone (GH) on insulin-like growth factor-I (IGF-I) mRNA level in primary culture of salmon hepatocytes. J. Endocrinol. 184:341-349.
Pierce, AL, M Shimizu, BR Beckman, DM Baker, WW Dickhoff. 2005. Time course of the GH/IGF axis response to fasting and increased ration in chinook salmon (Oncorhynchus tshawytscha). Gen. Comp. Endocrinol. 140:192-202.
Pietsch, TW. 2005. A new species of the ceratioid anglerfish genus Lasiognathus Regan (Lophiiformes: Thaumatichthyidae) from the Eastern North Atlantic off Madeira. Copeia 2005(1): 77-81.
Pietsch, TW. 2005. Dimorphism, parasitism, and sex revisited: modes of reproduction among deep-sea ceratioid anglerfishes (Teleostei: Lophiiformes). Ichthyol. Res. 52:207-236.
Pietsch, TW, M Shimazaki. 2005. Revision of the deep-sea anglerfish genus Acentrophryne Regan (Lophiiformes: Ceratioidei: Linophrynidae), with the description of a new species from off Peru. Copeia 2005(2): 146-151.
Piner, KR, MA Haltuch, JR Wallace. 2005. Preliminary use of oxygen stable isotopes and the 1983 El Niño to assess the accuracy of aging black rockfish (Sebastes melanops). Fish. Bull. 103:553–558.
Quinn, TP. 2005. Comment: Sperm competition in salmon hatcheries—the need to institutionalize genetically benign spawning protocols. Trans. Am. Fish. Soc. 134:1490-1494.
Quinn, TP, BR Dickerson, LA Vøllestad. 2005. Marine survival and distribution patterns of two Puget Sound hatchery populations of coho (Oncorhynchus kisutch) and chinook (Oncorhynchus tshawytscha) salmon. Fish. Res. 76:209-220.
Quinn, TP, KW Myers. 2005. Anadromy and the marine migrations of Pacific salmon and trout: Rounsefell revisited. Rev. Fish Biol. Fish. 14:421–442.
Roach, JC, G Glusman, L Rowen, A Kaur, MK Purcell, KD Smith, LE Hood, A Aderem. 2005. The evolution of vertebrate Toll-like receptors. PNAS 102:9577-9582.
Roberson, NE, DK Kimura, DR Gunderson. 2005. Indirect validation of the age reading method for Pacific cod, Gadus macrocephalus, using otoiths from marked and recaptured fish. Fish. Bull. 103:153-160.
Robins, JB, CA Abrey, TP Quinn, DE Rogers. 2005. Lacustrine growth of juvenile pink salmon and a comparison with sympatric sockeye salmon. J. Fish Biol. 66:1671-1680.
Rodriguez, MF, GD Wiens, MK Purcell, Y Palti. 2005. Characterization of Toll-like receptor 3 gene in rainbow trout (Oncorhynchus mykiss). Immunogenetics 57:510-519.
Roman, M, X Zhang, C McGilliard, W Boicourt. 2005. Seasonal and annual variability in the spatial patterns of plankton biomass in Chesapeake Bay. Limnol. Oceanogr. 50:480-492.
Sato, M, G Jensen. 2005. Shell selection by the hermit crab, Pagurus hartae (McLaughlin & Jensen, 1996) (Decapoda, Anomura). Crustaceana 78:755-760.
Scheuerell, JM, DE Schindler, MD Scheuerell, KL Fresh, TH Sibley, AH Litt, JH Shepherd. 2005. Temporal dynamics in foraging behavior of a pelagic predator. Can. J. Fish. Aquat. Sci. 62:2494–2501.
Schindler, DE, PR Leavitt, CS Brock, SP Johnson, PD Quay. 2005. Marine- derived nutrients, commercial fisheries, and production of salmon and lake algae in Alaska. Ecology 86:3225-3231.
Sharma, R, AB Cooper, R Hilborn. 2005. A quantitative framework for the analysis of habitat and hatchery practices on Pacific salmon. Ecol. Model. 183:231-250.
Simenstad, C, C Tanner, C Crandell, J White, J Cordell. 2005. Challenges of habitat restoration in a heavily urbanized estuary: evaluating the investment. J. Coast. Res. 40:6-23.
Springman, KR, G Kurath, JJ Anderson JM Emlen. 2005. Contaminants as viral cofactors: assessing indirect population effects. Aquat. Toxicol. 71:13-23.
van der Straaten, N, A Jacobson, D Halos, P Hershberger, AA Kocan, R Kocan. 2005. Prevalence and spatial distribution of intraerythrocytic parasite(s) in Puget Sound rockfish (Sebastes emphaeus) from the San Juan Archipelago, Washington (USA). J. Parasitol. 91:980-982.
Swartzman, G, A Winter, K Coyle, R Brodeur, T Buckley, L Ciannelli, G Hunt, J Ianelli, A Macklin. 2005. Relationship of age-0 pollock abundance and distribution around the Pribilof Islands, to other shelf regions of the eastern Bering Sea. Fish. Res. 74:273-287.
Tanaka, H, Y Naito, ND Davis, S Urawa, H Ueda, M Fukuwaka. 2005. First record of the at-sea swimming speed of a Pacific salmon during its oceanic migration. Mar. Ecol. Prog. Ser. 291:307-312.
Taub, FB. 2005. Oxygen dynamics as a measure of phytoplankton and grazer interactions. Verh. Internat. Verein. Limnol. 29:773-776.
Vander Zanden, MJ, TE Essington, Y Vadeboncoeur. 2005. Is pelagic top-down control in lakes augmented by benthic energy pathways? Can. J. Fish. Aquat. Sci. 62:1422-1431.
Veillette, PA, RJ White, JL Specker, G Young. 2005. Osmoregulatory physiology of pyloric ceca: regulated and adaptive changes in chinook salmon. J. Exp. Zool. 303A:608-613.
Veillette, PA, G Young. 2005. Tissue culture of sockeye salmon intestine: functional response of Na+, K+-ATPase to cortisol. Am. J. Physiol.—Regul., Integr., Comp. 288:1598-1605.
Viscido, SV, JK Parrish, D Grünbaum. 2005. The effect of population size and number of influential neighbors on the emergent properties of fish schools. Ecol. Model. 183:347-363.
Walters, CJ, R Hilborn. 2005. Exploratory assessment of historical recruitment patterns using relative abundance and catch data. Can. J. Fish. Aquat. Sci. 62:1985-1990.
Wang, S-P, C-L Sun, AE Punt, S-Z Yeh. 2005. Evaluation of a sex-specific age-structured assessment method for the swordfish, Xiphias gladius, in the North Pacific Ocean. Fish. Res. 73:79-97.
Weitkamp, LA. 2005. Quillfish Ptilichthys goodei, filiform prey for small coho and chinook salmon. Alaska Fish. Res. Bull. 11:61-65.
Winder, M, DE Schindler, JW Moore, SP Johnson, WJ Palen. 2005. Do bears facilitate transfer of salmon resources to aquatic macroinvertebrates? Can. J. Fish. Aquat. Sci. 62:2285–2293.
Winter, A, G Swartzman, L Ciannelli. 2005. Early- to late-summer population growth and prey consumption by age-0 pollock (Theragra chalcogramma), in two years of contrasting pollock abundance near the Pribilof Islands, Bering Sea. Fish. Oceanogr. 14:307-320.
Womble, JN, MF Willson, MF Sigler, BP Kelly, GR VanBlaricom. 2005. Distribution of Steller sea lions Eumetopias jubatus in relation to spring-spawning fish in SE Alaska. Mar. Ecol. Prog. Ser. 294:271-282.
Zeh, JE, AE Punt. 2005. Updated 1978–2001 abundance estimates and their correlations for the Bering–Chukchi–Beaufort Seas stock of bowhead whales. J. Cetac. Res. Mgmt. 7:169-175.
2006
Arthington, AH, SE Bunn, NL Poff, RJ Naiman. 2006. The challenge of providing environmental flow rules to sustain river ecosystems. Ecol. Applic. 16:1311-1318.
Baduini, CL, GL Hunt, Jr, AI Pinchuk, KO Coyle. 2006. Patterns in diet reveal foraging site fidelity of short-tailed shearwaters in the southeastern Bering Sea. Mar. Ecol. Prog. Ser. 320: 279-292.
Bañón, R, TW Pietsch, C-G Piñeiro. 2006. New record of Linophryne coronata (Lophiiformes, Linophrynidae) from the North-eastern Atlantic Ocean. Cybium 30(4):385-386.
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2007
Aires-da-Silva, AM, VF Gallucci. 2007. Demographic and risk analyses applied to management and conservation of the blue shark (Prionace glauca) in the North Atlantic Ocean. Mar. Freshwat. Res. 58:570-580.
Aires-da-Silva, AM, JJ Hoey, VF Gallucci. 2007. A historical index of abundance for the blue shark (Prionace glauca) in the western North Atlantic. Fish. Res.
Allen, CS, HB Rich, Jr, TP Quinn. 2007. Condition-dependent reproductive tactics by large and small anadromous male sockeye salmon Oncorhynchus nerka. J. Fish Biol. 70:1302-1307.
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Anderson, JH, TP Quinn. Movements of adult coho salmon (Oncorhynchus kisutch) during colonization of newly accessible habitat. Can. J. Fish. Aquat. Sci. 64:1143-1154.
Andrews, KS, PS Levin, SL Katz, D Farrer, VF Gallucci, G Bargmann. 2007. Acoustic monitoring of sixgill shark movements in Puget Sound: evidence for localized movement. Can. J. Zool. 85:1136-1142.
Arronte, JC, TW Pietsch. 2007. First record of Himantolophus mauli (Lophiiformes: Himantolophidae) on the slope off Asturias, Central Cantabrian Sea, Eastern North Atlantic Ocean. Cybium 31(1):85-86.
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Carlson, SM, R Hilborn, AP Hendry, TP Quinn. 2007. Predation by bears drives senescence in natural populations of salmon. PLoS One 2(12):ed1286. doi:10.1371/journal.pone.0001286.
Carlson, S, TP Quinn. 2007. Ten years of varying lake level and selection on size-at-maturity in sockeye salmon. Ecology 88(10):2620-2629.
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Garrett, DL, TW Pietsch, FM Utter, L Hauser. 2007. The hybrid sole, Inopsetta ischyra (Teleostei: Pleuronectiformes: Pleuronectidae): hybrid or biological species? Trans. Amer. Fish. Soc. 136(2):460-468.
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Goodwin, RA, JM Nestler, JJ Anderson, LJ Weber. 2007. A new tool to forecast fish movement and passage. Hydro Review 26(4):58-71.
Gilbert, BA, KJ Raedeke, JR Skalski, AB Stringer. 2007. Modeling black-tailed deer population dynamics using structured and unstructured approaches. J. Wildl. Mgmt. 71(1):144-154.
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Grant, JB, JD Olden, JJ Lawler, CR Nelson, BR Silliman. 2007. Academic institutions in the United States and Canada ranked according to research productivity in the field of conservation biology. Cons. Biol. 21:1139-1144.
Gutiérrez, M, G Swartzman, A Bertrand, S Bertrand. 2007. Anchovy and sardine spatial dynamics and aggregation patterns in the Humboldt Current ecosystem, Peru, from 1983-2003. Fish. Oceanog. 16(2):155-168.
Halpern, BS, BR Silliman, JD Olden, JP Bruno, MD Bertness. 2007. Incorporating positive interactions in aquatic restoration and conservation. Front. Ecol. Environ. 5:153-160.
Hauser, DD, MG Logsdon, EE Holmes, GR VanBlaricom, RW Osborne. 2007. Summer distribution patterns of southern resident killer whales Orcinus orca: core areas and spatial segregation of social groups. Mar. Ecol. Prog. Ser. 351:301-310. DOI: 10.3354/meps07117.
Henderson, MJ, JK Horne. 2007. Comparison of in situ, ex situ, and backscatter model estimates of Pacific hake (Merluccius productus) target strength. Can. J. Fish. Aquat. Sci. 64:1781-1794. DOI: 10.1139/F07-134.
Hilborn, R. 2007. Biodiversity loss in the oceans: how bad is it? Science 316:1281-1282.
Hilborn, R. 2007. Defining success in fisheries and conflicts in objectives. Mar. Pol. 31:153-158.
Hilborn, R. 2007. Faith, evolution, and the burden of proof—the author responds. Fisheries 32:91-93.
Hilborn, R. 2007. Managing fisheries is managing people: what has been learned? Fish and Fisheries 8:285–296.
Hilborn, R. 2007. Moving to sustainability by learning from successful fisheries. Ambio 36(4):296-303.
Hilborn, R. 2007. Reinterpreting the state of fisheries and their management. Ecosystems. DOI: 10.1007/s10021-007-9100-5.
Hilborn, R, G Hopcraft, P Arcese. 2007. Wildlife population increases in Serengeti National Park—response. Science 315:1790-1791.
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Hodgins-Davis, A, S Roberts, DF Cowan, J Atema, M Bennie, C Avolio, J Defaveri, G Gerlach. 2007. Characterization of SSRs from the American lobster, Homarus americanus. Mol. Ecol. Notes 7(2):330-332(3).
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Jacobs, SM, JS Bechtold, HC Biggs, ME McClain, RJ Naiman, SS Perakis, G Pinay, MC Scholes, NB Grimm, S Lorentz. 2007. Nutrient vectors and riparian processing: A review with special reference to African semiarid savanna ecosystems. Ecosystems DOI: 10.1007/s10021-007-9092-1.
Jacobs, SM, NE Pettit, RJ Naiman. 2007. Nitrogen fixing habit of the savanna tree Philenoptera violacea (Klotzsch) Schrire (Apple leaf) of different ages on a semi-arid riparian landscape. S. Afr. J. Bot. 73:163-167.
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Kharin, VE, TW Pietsch. 2007. New finding of a rare deep-sea ceratioid anglerfish, Dermatias platynogaster Smith and Radcliffe (Lophiiformes: Oneirodidae). J. Ichthy. 47(9):806–808.
Laska, SB, WJ Mitsch, K Orth, H Mashriqui, DJ Reed, L Shabman, CA Simenstad, BJ Streever, RR Twilley, CC Watson, JT Wells, DF Whigham. 2007. Restoration of the Mississippi Delta: Lessons from Hurricanes Katrina and Rita. Science 315:1679-1684.
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Metzger, KL, ARE Sinclair, KLI Campbell, R Hilborn, JGC Hopcraft, SAR Mduma, RM Reich. 2007. Using historical data to establish baselines for conservation: The black rhinoceros (Diceros bicornis) of the Serengeti as a case study. Biol. Cons. 139:358-374.
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Watson, JT, TE Essington, CE Lennert-Cody, MA Hall. 2008. Trade-Offs in the design of fishery closures: management of silky shark bycatch in the Eastern Pacific Ocean tuna fishery. Cons. Biol. DOI: 10.1111/j.1523-1739.2008.01121.x.
Weitkamp, LA, MV Sturdevant. 2008. Food habits and marine survival of juvenile Chinook and coho salmon from marine waters of Southeast Alaska. Fish. Oceanogr. 17:5, 380–395.
Weller, DW, A L Bradford, H Kato, T Bando, S Ohtani, A M Burdin, RL Brownell, Jr. 2008. Photographic match of a western gray whale between Sakhalin Island, Russia and Honshu, Japan: First link between feeding ground and migratory corridor. J. Cet. Res. Mgmt. 10:89-91.
Westley, PAH, SM Carlson, TP Quinn. 2008. Among-population variation in adipose fin size parallels the expression of other secondary sexual characteristics in sockeye salmon (Oncorhynchus nerka). Environ. Biol. Fish 81:439-446. DOI:10.1007/s10641-007-9236-3.
Westley, PAH, R Hilborn, TP Quinn, GT Ruggerone, DE Schindler. 2008. Long-term changes in rearing habitat and downstream movement by juvenile sockeye salmon (Oncorhynchus nerka) in an interconnected Alaska lake system. Ecol. Freshwat. Fish. 17:443–454.
Yoon, M, S Sato, JE Seeb, V Brykov, LW Seeb, V Varnavskaya, RL Wilmot, DH Jin, S Urawa, A Urano, and S Abe. 2008. Mitochondrial DNA variation and genetic population structure of chum salmon Oncorhynchus keta around the Pacific Rim. J. Fish Biol. 73(5):1256-1266.
Zabel, RW, J Faulkner, SG Smith, JJ Anderson, C Van Holmes, N Beer, S Iltis, J Krinke, G Fredricks, B Bellerud, J Sweet, A Giorgi. 2008. Comprehensive passage (COMPASS) model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia 609:289–300.
Zador, SG, AE Punt, JK Parrish. 2008. Population impacts of endangered short-tailed albatross bycatch in the Alaskan trawl fishery. Biol. Cons. 141:872-882.
Zador, SG, JK Parrish, AE Punt, JL Burke, SM Fitzgerald. 2008. Determining spatial and temporal overlap of an endangered seabird with a large commercial trawl fishery. End. Spec. Res. 5:103-115. DOI: 10.3354/esr00152.
Zuccarelli, MD, M Kusakabe, I Nakamura, EF Prentice, G Young, RL Ingermann. 2008. Acute stress response of Kootenai River white sturgeon Acipenser transmontanus Richardson reflected in peritoneal fluid and blood plasma. J. Fish Biol. 72:1831-1840. DOI: 10.1111/j.1095-8649.2008.01840.x. Available online at http://www.blackwell-synergy.com.
2009
A’mar, ZT, AE Punt, MW Dorn. 2009. The evaluation of two management strategies for the Gulf of Alaska walleye pollock fishery under climate change. ICES J. Mar. Sci. 66: 1614-1632. DOI:10.1093/icesjms/fsp044.
Anderson, JJ, WN Beer. 2009. Oceanic, riverine, and genetic influences on spring chinook salmon migration timing. Ecol. Applic. 19(8):1989–2003.
Banish, NP, BJ Adams, RS Shively, MM Mazur, DA Beauchamp, TM Wood. 2009. Distribution and habitat associations of radio-tagged adult lost river and shortnose suckers in Upper Klamath Lake, Oregon. Trans. Am. Fish. Soc. 138:153-168.
Beaudreau, AH, TE Essington. 2009. Development of a new field-based approach for estimating consumption rates of fishes and comparison with a bioenergetics model for lingcod (Ophiodon elongatus). Can. J. Fish. Aquat. Sci. 66(4):565-578.
Bradford, AL, DW Weller, YV Ivashchenko, AM Burdin, RL Brownell, Jr. 2009. Anthropogenic scarring of western gray whales (Eschrichtius robustus). Mar. Mamm. Sci. 25(1):161-175.
Branch, TA. 2009. Differences in predicted catch composition between two widely used catch equation formulations. Can. J. Fish. Aquat. Sci. 66:126-132.
Branch, TA. 2009. How do individual transferable quotas affect marine ecosystems? Fish and Fisheries 10:39-57.
Branch, TA, YA Mikhalev, H Kato. 2009. Separating pygmy and Antarctic blue whales using long-forgotten ovarian data. Mar. Mamm. Sci. 25:833-854. DOI: 10.1111/j.1748-7692.2009.00292.x.
Brown, RS, TJ Carlson, AE Welch, JR Stephenson, CS Abernethy, BD Ebberts, MJ Langeslay, ML Ahmann, DH Feil, JR Skalski, RL Townsend. 2009. Assessment of barotrauma from rapid decompression of depth-acclimated juvenile chinook salmon bearing radiotelemetry transmitters. Trans. Am. Fish. Soc. 138:1285-1301.
Carlson, SM, HB Rich, Jr, TP Quinn. 2009. Does variation in selection imposed by bears drive divergence among populations in the size and shape of sockeye salmon? Evolution 63-5:1244-1261. DOI:10.1111/j.1558-5646.2009.00643.x.
Carnevale, G, TW Pietsch. 2009. An Eocene frogfish (Lophiiformes: Antennariidae) from Monte Bolca, Italy: the earliest known skeletal record for the family. Palaeontology 2009:1-8.
Carnevale, G, TW Pietsch. 2009. The deep-sea anglerfish genus Acentrophryne (Teleostei, Ceratioidei, Linophrynidae) in the Miocene of California. J. Vert. Paleo. 29(2):129-138.
Cope, JM, AE Punt. 2009. Drawing the lines: resolving fishery management units with simple fisheries data. Can. J. Fish. Aquat. Sci. 66:1256-1273.
Courtenay, WR, J., BB Collette, TE Essington, R Hilborn, JW Orr, D Pauly, JE Randall, WF Smith-Vaniz. 2009. Risks of introductions of marine fishes: reply to Briggs. Fisheries 34:181-186.
Cross, AD, DA Beauchamp, JH Moss, KW Myers. 2009. Interannual variability in early marine growth, size-selective mortality, and marine survival for Prince William Sound pink salmon. Marine and Coastal Fisheries: Dynamics, Management and Ecosystem Science 1:57-70.
Cunningham, KM, MF Canino, IB Spies, L Hauser. 2009. Genetic isolation by distance and localized fjord population structure in Pacific cod (Gadus macrocephalus): limited effective dispersal in the northweastern Pacific Ocean. Can. J. Fish. Aquat. Sci. 66:153-166.
Dauer, MB, TR Seamons, L Hauser, TP Quinn, KA Naish. 2009. Estimating the ratio of hatchery-produced to wild adult steelhead on the spawning grounds using scale pattern analyses. Trans. Am. Fish. Soc. 138:15-22.
Dietrich, KS, EF Melvin, L Conquest. 2009. Integrated weight longlines with paired streamer lines—Best practice to prevent seabird bycatch in demersal longline fisheries. Biol. Cons. 141:1793-1805.
Doctor, KK, TP Quinn. 2009. Potential for adaptation-by-time in sockeye salmon (Oncorhynchus nerka): the interactions of body size and in-stream reproductive life span with date of arrival and breeding location. Can. J. Zool. 87:708-717.
Drinkwater, KF, F Mueter, KD Friedland, M Taylor, GL Hunt, Jr, J Hare, W Melle. 2009. Recent climate forcing and physical oceanographic changes in Northern Hemisphere regions: A review and comparison of four marine ecosystems. Prog. Oceanogr. 81:10-28.
Fore, LS, JR Karr, WS Fisher, P Bradley, WS Davis. 2009. Heeding a call to action for US coral reefs: The untapped potential of the Clean Water Act. Mar. Poll. Bull. 58:1421-1423.
Fox, HE, P Kareiva, B Silliman, J Hitt, DA Lytle, BS Halpern, CV Hawkes, J Lawler, M Neel, JD Olden, MA Schlaepfer, K Smith, H Tallis. 2009. Why do we fly? Ecologists' sins of emission. Front. Ecol. Environ. 7:294-296.
Gomez-Ichida, D, TW Knight, DE Ruzzante. 2009. Interaction of landscape and life history attributes on genetic diversity, neutral divergence and gene flow in a pristine community of salmonids. Molec. Ecol. 18:4854-4869. DOI: 10.1111/j.1365-294X.2009.04409.x.
Gurarie, E, JJ Anderson, RW Zabel. 2009. Continuous models of population-level heterogeneity inform analysis of animal dispersal and migration. Ecology 90:8, 2233-2242.
Jurado-Molina J, J Palleiro-Nayar, NL Gutiérrez. 2009. Developing a Bayesian framework for stock assessment and decision analysis of the red sea urchin fishery in Baja California, Mexico. Ciencias Marinas 35(2):183–193.
Hall, JE, J Chamberlin, AN Kagley, C Greene, KL Fresh. 2009. Effects of gastric and surgical insertions of dummy ultrasonic transmitters on juvenile chinook salmon in seawater. Trans. Am. Fish. Soc. 138:52-57.
Haltuch, MA, AE Punt, MW Dorn. 2009. Evaluating the estimation of fishery management reference points in a variable environment. Fish. Res. 100:42-56.
Hamel NJ, JK Parrish, J Laake. 2008. Linking colonies to fisheries: Spatio-temporal overlap between common murres (Uria aalge) from Tatoosh Island and coastal gillnet fisheries in the Pacific Northwest, USA. Biol. Cons. 141:3101-3115.
Hayes, NM, KJ Butkas, JD Olden, MJ Vander Zanden. 2009. Behavioural and growth differences between experienced and naïve populations of a native crayfish in the presence of invasive rusty crayfish. Freshwat. Biol. 54:1876-1887.
Hilborn, R. 2009. Pretty Good Yield and exploited fishes. Mar. Pol. DOI:10.1016/ j.marpol.2009.04.013.
Hilborn, R, E Litsinger. 2009. Cause of decline and potential for recovery of Atlantic cod populations. The Open Fish Science Journal 2:32-38.
Hobday, D, AE Punt. 2009. How much spatial structure can data for rock lobster off Victoria, Australia support? N. Zeal. J. Mar. Freshw. Res. 43:373-385.
Hobday, D, AE Punt. 2009. Management strategy evaluation for rock lobster, Jasus edwardsii, off Victoria, Australia: accounting for uncertainty in stock structure. N. Zeal. J. Mar. Freshw. Res. 43:485-509.
Hollowed, AB, NA Bond, TK Wilderbuer, WT Stockhausen, ZT A'mar, RJ Beamish, JE Overland, MJ Schirripa. 2009. A framework for modelling fish and shellfish responses to future climate change. ICES J. Mar. Sci. 66:1584-1594.
Holt, CA, AE Punt. 2009. Incorporating climate information into rebuilding plans for overfishe groundfish species of the U.S. west coast. Fish. Res. 100:57-67.
Holtgrieve, GW, DE Schindler, PK Jewett. 2009. Large predators and biogeochemical hotspots: Brown bear (Ursus arctos) predation on salmon alters nitrogen cycling in riparian soils. Ecol. Res. 24:1125-1135. DOI 10.1007/s11284-009-0591-8.
Honea, JM, JC Jorgensen, MM McClure, MM, TD Cooney, K Engie, D Holzer, R Hilborn, R. 2009 Evaluating habitat effects on population status: influence of habitat restoration on spring-run Chinook salmon. Freshwat. Biol. DOI:10.1111/j.1365-2427.2009.02208.x.
Johnson, PTJ, JD Olden, CT Solomon, MJ Vander Zanden. 2009. Community and ecosystem effects of invasive predators and herbivores in an experimental aquatic system. Oecologia 159:161-170.
Karnovsky, NJ, KA Hobson, ZW Brown, GL Hunt, Jr. 2009. Distribution an diet of Ivory Gulls (Pagophyla eburnean) in the North Water Polynya. Arctic 65:65-74.
Karr, JR. 2009. Natural: a benchmark, not a bias. Northw. Sci. 83(3):294-297.
Kendall, NW, TP Quinn. 2009. Effects of population-specific variation in age and length on fishery selection and exploitation rates of sockeye salmon (Oncorhynchus nerka). Can. J. Fish. Aquat. Sci. 66:896–908.
Kinzey, D, AE Punt. 2009. Multispecies and single-species models of fish population dynamics: comparing parameter estimates. Nat. Res. Model. 22(1):67-104.
Kusakabe, M, MD Zuccarelli, I Nakamura, G Young. 2009. Steroidogenic acute regulatory protein in white sturgeon (Acipenser transmontanus): cDNA cloning, sites of expression and transcript abundance in corticosteroidogenic tissue after an acute stressor. Gen. Comp. Endocrinol. 162: 233-240.
Lemasson, BH, JJ Anderson, RA Goodwin. 2009. Collective motion in animal groups from a neurobiological perspective: The adaptive benefits of dynamic sensory loads and selective attention. J. Theoret. Biol. 261:501-510.
Leprieur, F, JD Olden, S Lek, S Brosse. 2009. Contrasting patterns and mechanisms of spatial turnover for native and exotic freshwater fish in Europe. J. Biogeography 36:1899-1912.
Leprieur, F, S Brosse, E Garcia-Berthou, T Oberdorff, JD Olden, CR Townsend. 2009. Scientific uncertainty and the assessment of risks posed by non-native freshwater fishes. Fish and Fisheries 10:88-97.
Li, S, T Akamatsu, D Wang, K Wang, S Dong, X Zhao, W Zhuo, X Zhang, B Taylor, LA Barrett, ST Turvey, RR Reeves, BS Stewart, M Richlen, JR Brandon. 2008. Indirect evidence of boat avoidance behavior of Yangtze finless porpoise. Bioacoustics 17:174-176.
Li, T, JJ Anderson. 2009. The vitality model: A way to understand population survival and demographic heterogeneity. Theoret. Pop. Biol. 76(2):118-131.
Little, LR, AE Punt, BD Mapstone, GA Begg, B Goldman, N Ellis. 2009. Different responses to area closures and effort controls for sedentary and migratory harvested species in a multispecies coral reef linefishery. ICES J. Mar. Sci. 66:1931–1941.
Llado, V, S Terés, M Higuera, R Alverez, MA Noguera-Salva, JE Halver, PV Escriba, X Busquets. 2009. Pivotal role of dihydrofolate reductase knockdown in the anticancer activity of 2-hydroxyoleic acid. PNAS 106(33):13754-13758.
Luckenbach, JA, RJ Borski, HV Daniels, J Godwin. 2009. Sex determination in flatfishes: Mechanisms and environmental influences. Sem. Cell Develop. Biol. 20:256-263.
Martien, KK, D Gregovich, MV Bravington, AE Punt, AE Strand, DA Tallmon, BL Taylor. 2009. TOSSM: an R package for assessing performance of genetic analytical methods in a management context. Molec. Ecol. Res. 9:1456-1459.
McArt, SH, DE Spalinger, WB Collins, ER Schoen, T Stevenson, M Bucho. 2009. Summer dietary nitrogen availability as a potential bottom-up constraint on moose in south-central Alaska. Ecology 90(5):1400-1411.
McCarthy, SG, JJ Duda, JM Emlen, GR Hodgson, DA Beauchamp. 2009. Linking habitat quality with trophic performance of steelhead along forest gradients in the South Fork Trinity River watershed, California. Trans. Am. Fish. Soc. 138:506-521. DOI: 10.1577/T08-053.1.
Megrey, BA, JS Link, GL Hunt, Jr, E Moksness. 2009. Comparative marine ecosystem analysis: Applications, opportunities, and lessons learned. Prog. Oceanogr. 81:2-9.
Millspaugh, JJ, JR Skalski, RL Townsend, DR Diefenbach, MS Boyce, LP Hansen, K Kammermeyer. 2009. An evaluation of sex-age-kill (SAK) model performance. J. Wildl. Mgmt. 73(3):442-451.
Mueter, FJ, C Broms, KF Drinkwater, KD Friedland, JA Hare, GL Hunt, Jr, W Melle, M Taylor. 2009. Ecosystem responses to recent oceanographic variability in high-latitude Northern Hemisphere ecosystems. Prog. Oceanogr. 81:93-110.
Nakamura, I, M Kusakabe, G Young. 2009. Differential suppressive effects of low physiological doses of estradiol-17b in vivo on levels of mRNAs encoding steroidogenic acute regulatory protein and three steroidogenic enzymes in previtellogenic ovarian follicles of rainbow trout. Gen. Comp. Endocrinol. 163:318–323.
Olden, JD, JW Adams, ER Larson. 2009. First record of Orconectes rusticus (Girard, 1852) (Decapoda, Cambaridae) west of the Great Continental Divide in North America. Crustaceana 82:1347-1351.
Ostberg, CO, SD Pavlov, L Hauser. 2009. Evolutionary relationships among sympatric life history forms of Dolly Varden inhabiting the landlocked Kronotsky Lake, Kamchatka, and a neighboring anadromous population. Trans. Am. Fish. Soc. 138:1-14.
Overman, NC, DB Beauchamp, HB Berge, MM Mazur, JK McIntyre. 2009. Differing forage fish assemblages influence trophic structure in neighboring urban lakes. Trans. Am. Fish. Soc. 138:741-755.
Pietsch, TW, RJ Arnold, DJ Hall. 2009. A bizarre new species of frogfish of the genus Histiophryne (Lophiiformes: Antennariidae) from Ambon and Bali, Indonesia. Copeia 1:37-45.
Punt, AE, RC Buckworth, CM Dichmont, Y Ye. 2009. Performance of methods for estimating size–transition matrices using tag–recapture data. Mar. Freshw. Res. 60:168-182.
Quinn, TP, SM Carlson, SM Gende, HB Rich, Jr. 2009. Transportation of Pacific salmon carcasses from streams to riparian forests by bears. Can. J. Zool. 87:195-203.
Quinn, TP, TR Seamons. 2009. Tales from scales: old DNA yields insights into contemporary evolutionary processes affecting fishes. Molec. Ecol. 18:2545–2546.
Reed, TE, P Warzybok, AJ Wilson, RW Bradley, S Wanless, WJ Sydeman. 2009. Timing is everything: flexible phenology and shifting selection in a colonial seabird. J. Anim. Ecol. 78:376-387. DOI: 10.1111/j.1365-2656.2008.01503.x.
Rich, HB, Jr, TP Quinn, MD Scheuerell, DE Schindler. 2009. Climate and intraspecific competition control the growth and life history of juvenile sockeye salmon (Oncorhynchus nerka) in Iliamna Lake, Alaska. Can. J. Fish. Aquat. Sci. 66:238-246. DOI: 10.1139/F08-210.
Seamons, TR, MB Dauer, J Sneva, TP Quinn. 2009. Use of parentage assignment and DNA genotyping to validate scale analysis for estimating steelhead age and spawning history. N. Am. J. Fish. Mgmt. 29:396-403. DOI: 10.1577/M08-044.1.
Seamons, TR, TP Quinn. 2009. Sex-specific patterns of lifetime reproductive success in single and repeat breeding steelhead trout (Oncorhynchus mykiss). Behav. Ecol. Sociobiol. DOI: 10.1007/s00265-009-0866-7.
Skalski, JR, RA Buchanan, J Griswold. 2009. Review of marking methods and release–recapture designs for estimating the survival of very small fish: examples from the assessment of salmonid fry survival. Rev. Fish. Sci. 17:3, 391-401.
Skalski, JR, RA Buchanan, RL Townsend, TW Steig, S Hemstrom. 2009. A multiple-release model to estimate route-specific and dam passage survival at a hydroelectric project. N. Am. J. Fish. Mgmt. 29:670-679.
Taylor, IG, VF Gallucci. 2009. Unconfounding the effects of climate and density dependence using 60 years of data on spiny dogfish (Squalus acanthias). Can. J. Fish. Aquat. Sci. 66:351–366. DOI:10.1139/F08-211.
Thacker, CE, DM Roje. 2009. Phylogeny of cardinalfishes (Teleostei: Gobiiformes: Apogonidae) and the evolution of visceral bioluminescence. Molec. Phylogen. Evol. 52:735-745.
Travers, M-A, R Le Bouffant, CS Friedman, F Buzin, B Cougard, S Huchette, M Koken, C Paillard. 2009. Pathogenic Vibrio harveyi, in contrast to non-pathogenic strains, intervenes witht hep38 MAPK pathway to avoid an abalone haemocyte immune response. J. Cell. Biochem. 106:152-160.
Vigliano, PH, DA Beauchamp, D Milano, P Macchi, M Alonso, M Garcia Asorey, M Denegri, J Ciancio, M Rechencq, G Lippolt, JP Barriga. 2009. Quantifying predation on galaxiids and other native organisms by introduced rainbow trout in an ultraoligotrophic lake in Northern Patagonia, Argentina: A bioenergetics modeling approach. Trans. Am. Fish. Soc. 138:1405-1419.
Wight, NA, J Suzuki, B Vadopalas, CS Friedman. 2009. Development and optimization of quantitative PCR assays to aid Ostrea lurida Carpenter 1864 restoration efforts. Shellf. Res. 28(1):33-41.
Woods, PJ, R Müller, O Seehausen. 2009. Intergenomic epistasis causes asynchronous hatch times in whitefish hybrids, but only when parental ecotypes differ. J. Evol. Biol. 22:2305-2319.
Worm, B, R Hilborn, JK Baum, TA Branch, JS Collie, C Costello, MJ Fogarty, EA Fulton, JA Hutchings, S Jennings, OP Jensen, HK Lotze, PM Mace, TR McClanahan, C Minto, SR Palumbi, AM Parma, D Ricard, AA Rosenberg, R Watson, D Zeller. 2009. Rebuilding global fisheries. Science 325:578-585.
Zador, SG, JK Parrish, AE Punt. 2009. Factors influencing subcolony colonization and persistence in a colonial seabird, the common murre Uria aalge. Mar. Ecol. Prog. Ser. 376:283-293. DOI: 10.3354/meps07797.
