Prospective graduate students may contact this person about availability as a faculty advisor.
Mobile species which have among the highest aesthetic and economic value are also among the most difficult of the natural resources to survey. Yet, wild population often must compete with the demands of greater energy and commodities production. In order to assess the cost benefits of alternative resource management policies, improvements in population survey techniques and tests of effects will be necessary. Current research efforts focus on assessing population effects in an hypothesis testing framework using capture-recapture data. Research on design optimality indicates that many field studies which failed to detect population changes could have done so if sampling efforts had been properly allocated. Current applications of statistics include:
- Estimating salmonid smolt survival using passive and radio-tag methodologies in the Columbia River Basin.
- Designing fixed-location hydroacoustic monitoring at hydroelectric projects to estimate bypass efficiency, spill passage, and turbine passage rates of salmonids.
- Estimating run-timing of the salmonid outmigration in Columbia and Snake Rivers.
- Estimating the impacts of larval fish entrainment at a coastal nuclear power plant.
- Incorporating smolt survival rates with engineering to develop fish-friendly turbines.
- Developing demographic techniques for monitoring wildlife populations.
Publications
- Brown, RS, TJ Carlson, AJ Gingerich, JR Stephenson, BD Pflugrath, AE Welch, MJ Langeslay, ML Ahmann, RL Johnson, JR Skalski, AG Seaburg, RL Townsend. 2012. Quantifying mortal injury of juvenile Chinook salmon exposed to simulated hydro-turbine passage. Trans. Am. Fish. Soc. 141(1):147-157.
- Diefenderfer, H, G Johnson, J Skalski, S Breithaupt, A Coleman. 2012. Application of the diminishing returns concept in the hydroecologic restoration of riverscapes. Landsc. Ecol. 27:671-682.
- Carlson, TJ, RS Brown, JR Stephenson, BD Pflugrath, AH Colotelo, AJ Gingerich, PL Benjamin, MJ Langeslay, ML Ahmann, RL Johnson, JR Skalski, AG Seaburg, RL Townsend. 2012. The influence of tag presence on the mortality of juvenile Chinook salmon exposed to simulated hydroturbine passage: Implications for survival estimates and management of hydroelectric facilities. N. Am. J. Fish. Manage. 32:249-261.
- Skalski, JR, JJ Millspaugh, MV Clawson. 2012. Comparison of statistical population reconstruction using full and pooled adult age-class data. PLoS One 7. doi:10.1371/journal.pone.0033910.
- Estes, JA, J Terborgh, JS Brashares, ME, Power, J Berger, WJ Bond, SR Carpenter, TE Essington, et al. 2011. Trophic Downgrading of Planet Earth. Science 333:301-306.
- McMichael, GA, JR Skalski, KA Deters. 2011. Survival of juvenile Chinook salmon during barge transport. N. Am. J. Fish. Mgmt. 31(6):1187-1196. doi:10.1080/02755947.2011.646455.
- Hurley, MA, JW Unsworth, P Zager, EO Garton, DM Montgomery, JR Skalski, CL Maycock. 2011. Demographic response of mule deer to experimental reduction of coyotes and mountain lions in southeastern Idaho. Wildl. Mono. 178 (1):1767-1773.
- Diefenderfer, HL, RM Thom, GE Johnson, JR Skalski, KA Vogt, BD Ebberts, GC Roegner, DM Dawley. 2011. A levels-of-evidence approach for assessing cumulative ecosystem response to estuary and river restoration programs. Ecol. Restor. 29(1-2):111-132.
- Skalski, JR, JJ Millspaugh, MV Clawson, JL Belant, DR Etter, BJ Frawley, PD Friedrich. 2011. Abundance trends of American martens in Michigan based on statistical population reconstruction. J. Wildl. Manage. 75(8):1767-1773. doi:10.1002/jwmg.227.
- Vynne, C, JR Skalski, RB Machado, MJ Groom, ATA Jácomo, J Marinho-Filho, MB Ramos Neto, C Pomilla, L Silveira, H Smith, SK Wasser. 2011. Effectiveness of scat-detection dogs in determining species presence in a tropical savanna landscape. Cons. Biol. 25(1):154-162. doi:10.1111/j.1523-1739.2010.01581.
- Broms, K, JR Skaski, JJ Millspaugh, CA Hagen, JH Schulz. 2010. Using statistical population reconstruction to estimate demographic trends in small game populations. J. Wildl. Mgmt. 74(2):310-317. DOI: 10.2193/2008-469.
- Buchanan, RA., JR Skalski. 2010. Using multistate mark-recapture methods to model adult salmonid migration in an industrialized river. Ecol. Model. 221:582–589.
- Buchanan, RA, JR Skalski, AE Giorgi. 2010. Evaluating surrogacy of hatchery releases for the performance of wild yearling chinook salmon from the Snake River basin. N. Am. J. Fish. Mgmt. 30:1258-1269.
- Giorgi, A, J Skalski, C Peven, M Langeslay, S Smith, T Counihan, R Perry, S Bickford. 2010. Guidelines for conducting smolt survival studies in the Columbia River. Pages 47-78 in KS Wolf JS O’Neal (eds), Tagging, Telemetry and Marking Measures for Monitoring Fish Populations—A compendium of new and recent science for use in informing technique and decision modalities. Pacific Northwest Aquatic Monitoring Partnership (PNAMP) Special Publication 2010-002, Chapter 3, (http://www.pnamp.org/node/2867 ).
- Parsons, AL, JR Skalski. 2010. Quantitative assessment of salmonid escapement techniques. Rev. Fish. Sci. 18(4):301-314.
- Skalski, JR, S Liao, RA Buchanan. 2010. Performance of three alternative estimators of stream residence time based on live and dead counts of salmonids. N. Am. J. Fish. Mgmt. 30:191-208. DOI: 10.1577/M08-237.1.
- Skalski, JR, RL Townsend, TW Steig, S Hemstrom. 2010. Comparison of two alternative approaches for estimating dam passage survival using acoustic-tagged sockeye salmon smolts. N. Am. J. Fish. Mgmt. 30:831-839.
- Brown, RS, TJ Carlson, AE Welch, JR Stephenson, CS Abernethy, BD Ebberts, MJ Langeslay, ML Ahmann, DH Feil, JR Skalski, RL Townsend. 2009. Assessment of barotrauma from rapid decompression of depth-acclimated juvenile chinook salmon bearing radiotelemetry transmitters. Trans. Am. Fish. Soc. 138:1285-1301.
- Millspaugh, JJ, JR Skalski, RL Townsend, DR Diefenbach, MS Boyce, LP Hansen, K Kammermeyer. 2009. An evaluation of sex-age-kill (SAK) model performance. J. Wildl. Mgmt. 73(3):442-451.
- Skalski, JR, RA Buchanan, RL Townsend, TW Steig, S Hemstrom. 2009. A multiple-release model to estimate route-specific and dam passage survival at a hydroelectric project. N. Am. J. Fish. Mgmt. 29:670-679.
- Ashbrook, CE, JR Skalski, JF Dixon, KW Hassel, EA Schwartz. 2008. Estimating bycatch survival in a mark-selective fishery. Pages 677–685 in JL Nielsen, JJ Dodson, K Friedland, TR Hamon, J Musick, E Verspoor (ed), Reconciling Fsheries with Conservation: Proceedings of the Fourth World Fisheries Congress. American Fisheries Society, Symposium 49, Bethesda, Maryland.
- Skalski, JR, JJ Millspaugh, KE Ryding. 2008. Effects of asymptotic and maximum age estimates on calculated rates of population change. Ecol. Model. 212:528-535. DOI:10.1016/j.ecolmodel.2007.11.012.
- Skalski, JR, RL Townsend, LL McDonald, JW Kern, JJ Millspaugh. 2008. Type I errors linked to faulty statistical analyses of endangered subspecies classifications. J. Agric., Biol., Environ. Stat. 13(2):199-220.
- Buchanan, RA, JR Skalski. 2007. A migratory life-cycle release–recapture model for salmonid PIT-tag investigations. J. Agric. Biol. Environ. Stat. 12(3):325-345.
- Deriso, RB, MN Maunder, JR Skalski. 2007. Variance estimation in integrated assessment models and its importance for hypothesis testing. Can. J. Fish. Aquat. Sci. 64:187-197.
- Gilbert, BA, KJ Raedeke, JR Skalski, AB Stringer. 2007. Modeling black-tailed deer population dynamics using structured and unstructured approaches. J. Wildl. Mgmt. 71(1):144-154.
- Miller, TJ, JR Skalski, JN Ianelli. 2007. Optimizing observer coverage when faced with multiple objectives. ICES J. Mar. Sci. 64:97-109.
- Ryding, KE, JJ Millspaugh, JR Skalski. 2007. Using time series to estimate the finite rate of population. J. Wildl. Mgmt. 71(1):202-207.
- Skalski, JR, JJ Millspaugh, P Dillingham, RA Buchanan. 2007. Note: Calculating the variance of the finite rate of population change from a matrix model. Math. Environ. Model. Software 22:359-364.
- Skalski, JR, RL Townsend, BA Gilbert. 2007. Calibrating population reconstruction models using catch-effort and index data. J. Wildl. Mgmt. 71(4):1309-1316.
- Buchanan, RA, JR Skalski, SG Smith. 2006. Estimating the effects of smolt transportation from different vantage points and management perspectives. N. Am. J. Fish. Mgmt. 26:460-472.
- Dillingham, PW, JR Skalski, KE Ryding. 2006. Fine-scale geographic interactions between Steller sea lion (Eumetopias jubatus) trends and local fisheries. Can. J. Fish. Aquat. Sci. 63:107-119.
- Miller, TJ, JR Skalski. 2006. Integrating design- and model-based inference to estimate length and age composition in North Pacific longline catches. Can. J. Fish. Aquat. Sci. 63:1092-1114.
- Skalski, JR, JJ Millspaugh. 2006. Application of multidimensional change-in-ratio methods using program USER. Wildl. Soc. Bull. 34:433-439.
- Skalski, JR, JJ Millspaugh, KE Ryding. 2006. The impact of hunter postseason questionnaire design on big game harvest estimation. Wildl. Soc. Bull. 34:329-337.
- Skalski, JR, JJ Millspaugh, RD Spencer. 2006. Population estimation and biases in paint-ball mark-resighting surveys of elk. J. Wildl. Mgmt. 69(3):1043-1052.
- Townsend, RL, JR Skalski, P Dillingham, TW Steig. 2006. Correcting bias in survival estimation resulting from tag failure in acoustic and radiotelemetry studies. J. Agric. Biol. Environ. Stat. 11:183-196.
- Skalski, JR, KE Ryding, JJ Millspaugh. 2005. Wildlife demography: Analysis of sex, age, and count data. Academic Press. San Diego, CA. 656 p.
- Johnson, GE, JB Hedgepeth, JR Skalski, AE Giorgi. 2004. A Markov chain analysis of fish movements to determine entrainment zones. Fish. Res. 69(3):349-358.
- Skalski, JR, JJ Millspaugh. 2004. Generic variance expressions, precision, and sampling optimization of the sex-age-kill model of population reconstruction. J. Wildl. Mgmt. 66:1308-1316.
- Ehrler, CP, JR Steinbeck, EA Laman, JB Hedgepeth, JR Skalski, DL Mayer. 2002. A process for evaluating adverse environmental impacts from cooling water system entrainment at a California power plant. The Sci. World J. 2:81-105.
- Gove, NE, JR Skalski, P Zager, RL Townsend. 2002. Statistical models for population reconstruction using age-at-harvest data. J. Wildl. Mgmt. 66:310-320.
- Hedgepeth, JB, GE Johnson, JR Skalski, J Burczynski. 2002. Active fish sonar (AFTS) for assessing fish behavior. Acta Acoustic United with Acustica 88:739-742.
- Muir, WD, SG Smith, JG Williams, EE Hockersmith, JR Skalski. 2001. Survival estimates for migrant yearling chinook salmon and steelhead in the lower Snake and lower Columbia Rivers, 1993-1998. N. Am. J. Fish. Mgmt. 21:269-282.
- Skalski, JR, DA Coats, AK Fukuyama. 2001. Criteria for oil spill recovery: a case study of the intertidal community of Prince William Sound, Alaska, following the Exxon Valdez oil spill. Environ. Mgmt. 28:9-18.
- Skalski, JR, J Lady, R Townsend, AE Giorgi, JR Stevenson, CM Peven, RD McDonald. 2001. Estimating in-river survival of migrating salmonid smolts using radiotelemetry. Can. J. Fish. Aquat. Sci. 58:1987-1997.
- Lady, J. and J. R. Skalski. 1998. Estimators of stream residence time of Pacific salmon (Oncorhynchus spp.) based on release-recapture data. Can. J. Fish. Aquat. Sci. 55:2580-2587.
- Skalski, J. R. 1998. Estimating season-wide survival rates of outmigrating smolt in the Snake River, Washington. Can. J. Fish. Aquat. Sci. 55:761-769.
- Skalski, J. R., S. G. Smith, R. N. Iwamoto, J. G. Williams, and A. Hoffmann. 1998. Use of PIT-tags to estimate survival of migrating juvenile salmonids in the Snake and Columbia Rivers. Can. J. Fish. Aquat. Sci. 55:1484-1493.
- Skalski, J. R. 1996. Regression of abundance estimates from mark-recapture surveys against environmental covariates. Can. J. Fish. Aquat. Sci. 53:196-204.
- Skalski, J. R., G. E. Johnson, C. M. Sullivan, E. Kudera, and M. W. Erho. 1996. Statistical evaluation of turbine bypass efficiency at Wells Dam on the Columbia River, Washington. Can. J. Fish. Aquat. Sci. 53:2188-2198.
- Skalski, J. R. 1995. Statistical considerations in the design and analysis of environmental damage assessment studies. J. Envir. Manage. 43:67-85.
- Skalski, J. R. 1994. Estimating wildlife resources based on incomplete area surveys. Wildl. Soc. Bul. 22:192-203.
- Skalski, J. R., A. Hoffmann, B. H. Ransom, and T. W. Steig. 1993. Fixed-location hydroacoustic monitoring designs for estimating fish passage using stratified random and systematic sampling. Can. J. Fish. Aquat. Sci. 50:1208-1221.
- Skalski, J. R., and J. A. Perez-Comas. 1993. Nonparametric maximum likelihood estimation of mesh size selectivity. Fish. Res. 18:321-334.
- Skalski, J. R., W. H. Pearson, and C. I. Malme. 1992. Effects of sound from a geophysical device on catch-per-unit-effort in a hook and line fishery for rockfish (Sebastes spp.). Can. J. Fish. Aquat. Sci. 49:1357-1365.
- Skalski, J. R., and D. S. Robson. 1992. Techniques for wildlife investigations: Design and analysis of capture data. Academic Press. 237 pp.
- Skalski, J. R. 1990. A design for long-term status and trends monitoring. J. Envir. Manage. 30:139-144.
